RNA id: XM_026937770.2


Basic Information

Item Value
RNA id XM_026937770.2
length 1512
RNA type mRNA
GC content 0.40
exon number 4
gene id ipmka
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17462712 ~ 17465611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatggtcaggtgtctaccaacctttggccatgtagtgtataaaCAACAGCTCCAAATGGCAACacatttttgctttgctttactTCATTTCATAGACTGCAAATTAATGTTGATGTGTGACTAATGACTGATTTAATGAAGTTATTCCTCAATTAATAATTGTTTCACTGGTTAATGATTTATACTGGAGTCTCCTCTCAGTGAATGTGCTATGTTTGCATAGTTGACATCATGTCCAACAGGAACAGGATGTAGTCGTAGTAGCCCTGTTTTATCTGAGAAGTGAGTGGAATGTAAGCTGAAAGGGACATTATGAGCTGTATCTGAAGCTGGAGGATGTGGCCAGGAGGTTTACATGTCCATGCATCATGGATGTGAAGATTGGGAGAAGGAGCTATGATCCGTTTGCCTCACAAGATAAACGGGAAGAGCAGATTAGAAAGTATCCTCTAATGGAAGAGATCGGGTTCTTGATTCTAGGAATGAgggTTTACCATGTAGCTTCAGGAAGCTATACTAGTCACGAACAGTTCTATGGACGCAGTCTGACAAAGGGAACACTCAAAACTGGATTAGCTAGATTCTTCCATAATGGAGAAGAGCTAAGAAAAGATGCCATTTCTTCAAGCATCCATAAAATCCGTAACATCCTGCGCTGGTTTGAGGGCCAGAAACAGCTCCACTTCTATGCCAGCTCTCTGTTATTTGTGTATGAGGGCTCTCTTCACCTAGCCAATGCAAAGAACAGAAGTGAAGCTCTGACAGGACAGAAGCATATACAAGCTGAGctagagaataaaaataatgctcATCTCACCTGCTCAAAGTTGAAGAGTTCCTGTGGGCAGGTAAACTGTAGTAGCATTCTTGAAGCCATTCACTATGTGAGGAAAGTGAATGGGTTTGGGTCTCACTCTCTACATCACCAGGATAAGGGAATGATGGCTGAAATGGaggcaaaaacaaacactgatgtTGAAGACAAGAGCTCAAATGGAGGGAAAGAGGAAGATGTGGAGGTCAGGATGATTGATTTTGCCCATGTGTTTCCCAGTGACAGCTCAGATGAAGGCTACATATATGGACTGAGGAGCCTCCTCTTTGCTCTGGAGCAGATCCTCCAAGACTGacttcccccttttttttttctgcgctGGGTTTTTCAAAGTTTATCTTGTAAGGATGTTGAAATAGTGAGGTAGTGTCAGTCATCTATTATATAATGAATGATACATTAGATATACTTGTATCTGCTTATAATCAGACACTGCTGGTGCTGGTGGCTGGAATACAGGAGGGAAGATGTTTGGTGTAGATGTTTTTACTCTAAATCACCAAACTTACTGAAAAAAAGCCCCCAAAAAACAACTGAATGTAAGTGACActgaatgtaatttaaatgaatttagaaaaataactgcaaaaataaaagcaaactcCTCTAGAGCACAGCTCTGATGTGAATATTAGAGAACTTTACAATAGGAAAGCATTAAATTCTTTCTTACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404617.2 lncRNA downstream 43305 17371442 ~ 17419407 (-) True LOC113545496
XR_004577905.1 lncRNA downstream 333099 17116954 ~ 17129613 (-) True LOC117596916
TU56682 lncRNA downstream 372129 17090382 ~ 17090583 (-) True G47940
TU56621 lncRNA downstream 453663 17008840 ~ 17009049 (-) True G47882
TU56451 lncRNA downstream 673983 16788519 ~ 16788729 (-) True G47735
TU56927 lncRNA upstream 35022 17500633 ~ 17503860 (-) True G48158
TU57004 lncRNA upstream 183520 17649131 ~ 17662704 (-) True G48195
TU57070 lncRNA upstream 243310 17708921 ~ 17710376 (-) True G48248
TU57076 lncRNA upstream 250624 17716235 ~ 17727208 (-) True G48250
TU57083 lncRNA upstream 297183 17762794 ~ 17765665 (-) True G48254
XM_034303043.1 mRNA downstream 186054 17132132 ~ 17276658 (-) False pcdh15a
XM_034303042.1 mRNA downstream 186054 17132132 ~ 17276658 (-) True pcdh15a
XM_034303046.1 mRNA downstream 186054 17162070 ~ 17276658 (-) False pcdh15a
XM_034303044.1 mRNA downstream 186054 17162310 ~ 17276658 (-) False pcdh15a
XM_034303045.1 mRNA downstream 186054 17162310 ~ 17276658 (-) False pcdh15a
XM_026935666.2 mRNA upstream 5636 17471247 ~ 17476092 (-) False cisd1
XM_026935656.2 mRNA upstream 22418 17488029 ~ 17491675 (-) True galm
XM_026932098.2 mRNA upstream 47570 17513181 ~ 17522014 (-) True hells
XM_034302554.1 mRNA upstream 95793 17561404 ~ 17574422 (-) False LOC113538666
XM_026933916.2 mRNA upstream 96082 17561693 ~ 17574422 (-) False LOC113538666
XR_004577773.1 other downstream 479983 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other downstream 479983 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other downstream 479983 16979131 ~ 16982729 (-) False morn4
TU55523 other downstream 2046229 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2677978 14779865 ~ 14784734 (-) False sdhaf4
TU56907 other upstream 5576 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 96721 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other upstream 96721 17562332 ~ 17574422 (-) False LOC113538666
TU56951 other upstream 191970 17657581 ~ 17661384 (-) False col13a1
TU57664 other upstream 864757 18330368 ~ 18613401 (-) True lrmda

Expression Profile