RNA id: XR_004577863.1


Basic Information

Item Value
RNA id XR_004577863.1
length 5298
RNA type misc_RNA
GC content 0.45
exon number 20
gene id slka
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13005486 ~ 13031196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGTCACCATGAGGCggcagtgcgcatgcgcaaacTCTTTCTTCATCACCGCTGTGCGCGCGCCTTCTCCATCCAGCGACGGCTCCTCATCTATTTTCAGAAGTTAGACTGAAACAGACTGAGCTTTTCCTGTCAGTGAGGATGGGCGCTTTGAATCAACACAGCAACCTGTTCTGCCGGGCGGAGTAATGTGATATGTCTGGTAATAGGCTAGAGTAGTGCGGGTTCTTGTTTTAGGcctattttatttctctttctgtaaCCAGGAACAGGCTGGAGAGAGGCGGCGCGGCTGGGCCGTGACTGTCTGTGTGGCTTGACTGGAAGCTAGCTGTAGCAGCTTTCCGAGCAGTTTGGACTTCAGCATCCGTTTTCTTCCGTTTGGACTCCTTATATTTGTTTGATAAATACACGGTTTTATTGATTTGCACCTATTGTCTGACAAGGTGAAGCGAAATTTCTTTTGAAAGTGGATTTTCTCGAAGAAGGACCAGCTCTCATTTTACTGCTAAACCCGAGAAAATAACTGAAGGAGAGGACTACTATTTTGTATCGACGGTCGGATGATTCAGTACCGTTATGGACATGTTTATGGATGTAGCTTACACACTTTATCACAACTGCTCACTTCTCAGTAGGCTAGTAATTTCCGGCACATCCAACATAAAGTAGAGATAAGTCTATCTTGTGCTTTTAACTgcagtgtaattattattattattattattattattaaatgcgTGGcaagagctagctagctagttagcaaactTAGTTGAATTAAGGGTTAGTtagttttagttatttatttaacagattcTCCTCGAGCGGTAAAAAAGATGTCGTTTTTCAACCTGCGGAAGATATTTAAGCTTGGCATcgacaagaagaagaaacaatACGAACACGTTCACAGAGACGTGAATCCGGAGGAAGTGTGGGAGATTGTGGGAGAGCTCGGAGATGGAGCCTTTGGGAAGGTCTACAAGGCTCAGAACAAGCAAACAGGCGTACTTGCAGCTGCTAAAGTGATTGACACCAAGACAGAGGAGGAGCTGGAAGACTACATGGTTGAGATAGATATCCTTGCTTCCTGTGACCATCAGTACATTGTCAAACTGCTTGACGCATTCTACTTTGAGAGCAAGTTATGGATACTTATTGAGTTTTGTGCAGGAGGTGCAGTCGATGCTGTCATGTTGGAGCTGGAGCGGCCACTGACAGAGCCACAGATCCGTGTGGTGTGTAAACAGACCCTAGAAGCCCTGGCTTATCTTCATGAGAATAAGATCATCCACAGAGACTTGAAAGCtggaaacattctgttttcttcAGATGGTGACGTCAAGCTGGCTGACTTTGGAGTGTCTGCGAAAAACACTAGGACTCTACAAAGAAGAGACTCTTTCATTGGGACTCCTTACTGGATGGCCCCTGAAGTGGTGATGTGTGAGACATCAAAAGACAGACCGTATGACTACAAAGCGGACATCTGGTCCCTTGGGATCACACTGATCGAGTTGGCACAGATTGAGCCTCCCAATCACGAGATGAACCCTATGAGAGTCCTGCTCAAAATAGCCAAGTCTGAGCCCCCTACACTCATGCAGCCCTCCCGATGGTCTCCAGAGTTCAGTGATTTCCTGAAGAAAGCTCTGGATAAGAATGTAGACCACAGATGGAGCTCAACACAACTCCTACAGcatcCATTTGTTTTAagtgtaaatgataacagaCCTCTGCGTGAGCTGATTGCTGAAGCTAAAGCAGAAGTGTTTGAGGAGTTTGAGGAAGgcaaagaagaagaggaagaagaggagacagacacacagatgGATGTGCGGGGACATAAGCGTGCACTGTCTGAAATCAGCGCTGGCAGCTTAGAGGACGAGAAGCTTTCTGAGAATGCGTCTATGCTGGAATCAGTCACTGAGATAGCTGAGCCACAGGCAAAACCCAAAACAGCTGAGGACAGTAAGAGGAGCTCAGCTGTGGTTCTGGATTCCTCTGATCCTGACCATGCTGATGAAGAGAGCAGAAAGGCAGCTGCAACTGCAGACCTCAGTCCTAAAGACTCGCATGCTGGAGACAAGAGTGTGTCAAGCCAGGAAGAAATCCAGACTTCAGAAAGCACTGCTGAGGAGAAGATTCCTGAAGTTCCAGAGACCCAGAAAGATGCTGTCCAGAAGACCGTGACTGTCAGTGAAGAGactggagaggaggagaaggagcagACTAGGATGAATGAACCTACTGAGAGCtgtgaggaagaaaaggaaatggTGGATGAACAAAAAGATCAGCAGGTcgagaagaaagaggaaatgaaGCCAGAACTCTTAGTAGAGGAATGTTCTGAACCTGTGGAAATAACTGAACCACAGAACACTCTCCCTGAagaagctgttactgaagaggGTGAGGTGTGTATGGATGACACAGGAAAGACAAAGAACTTGGTTGAGACTGAAGGAGTgacagagaagaggaaagaggaTGTACAGCAAGAGAAAGTGGGAGAAGAAACTGGTGTTGATATGCCTGCagaggaggaaaaggaagaggTGGAAGAAAAGAAGCTCCAGCCAGAAGCTGAAGAGGACCAACCTAAAAATGAAGTAGATGCTAAGGAGTCTATACAagtggaaaacaaaacagagtCAGTGACCAATACAGTTATTAAAGATACACCTGCTGAGACAGAGAAAATGGTGAATGAAAGTAAGACCTCTATGGATGTGTCACCTGCCATTATCATTAATGGAGAAAAGGATGAGGTAGACCATATGTCAAAGAAAACCCCAGAAACAAATAATGAGCAATCTGCATCCCCTGAAGCATCTACAGAGGATGAGGTAGACCAGAACAGAGCTGTGTCAATTAAACCCGATATTGAGAAGGATTCTGATTCAGGAAGCAGCTCTGCAGCAGATACCAACAGCATTGACATGAACCTTTCTATCTCCAGCTTCCTGTCCAGAAGTAAAGACGGATCTATTTCTGTACAGGATGCCAAATACCAGAAGAAGACTCTGAAAAAGACGCGCAAGTTTATGGTGGATGGGGTGGAGGTCAGCGTCACCACTTCAAAAATAGTTACTGATAATGACACCAAGAATGAAGAACTGCGGTTTTTAAGGCGTCAGGAGCTGCGTGAGCTGAGGCTGCTACAGAAGGAGGAGCAAAGAGCCCATCAACAGCTTACCAATAAGCTGCAGCAGCAGAAAGAGCAACTGTTCCGGCGCTTTGAGCAGGAGATGACAgTAAAGAAGCGTCAGTATGACCAAGAAGTGGAGAACCTAGAGAAGCAGCAGAAGCAGACTGTTGAGCGTATGGAACAAGACCACACCAATCGTCTGAGGGATGAGGCTAAGAGGATCAAATCTGAGCAAGACAAGGAGCTCTCCAAGTTCCAGAACATGCTAAAGAATCGCAAGAAAGAGGTCAAACAGGAGATCGGCATGTCCCCCAAACACATGAGAAAAGAGCTTATGAAACGCTTAAAGGAAGACCTCGTTGTTATTCAGCAAGAAGAGGAACAGGAGTTTCTGCAGAAGCAACAGCAGGAACTGGATGGCGCTCTGAAGAAGATCATCCAGCAGCACAAACTAGAGATCGCCACCATAGAAAGAGATTGCCTCAACCATAAGCAGCAGCTTATGAGAGCGCGTGAGGCAGCCATGTGGGAGTTGGAGGAGCGCCACCTGCAGGAGAAGCACCAGTTGCTGAAGCAGCAGCTGAAAGATCAGTACTTCATGCAGAGGCACCAGCTCCTAAAAAGACATGACAAGGAGATGGAGCAGATGCAGGGTTATAACCAGCGCCTGATAGAAGAGATGAAAAACAGGCAGGCTCAGGAGAGAGCTCGACTACCAAAGATCCAGCGCAGTGACGCAAAGACTCGTATGGCCATGTTTAAGAAAAGTCTGCGCATCACTGGCACAGGAACTCCGgaacaggacagagagaaaattaAGCAGTTTGCTGCACAGGAGGAGAAGAGACAGAAGAATGAGCGACTTCATCAGCACCAGAAGCATGAGAACCAGATGAGAGACCTTCAGCTTCAGTGTGACTCCAACATCAGAGAGCTTCAACAGCTacagAATGAGAAGTGCCATGTGCTAATTGAGCATGAGACTCAGAAGCTGAAGGAGCTGGATGAGGAGCACAGTCAAGAGCTTAAAGACTGGAGAGAGAAACTTCGTCCCAGGAAGAAGGCTCTTGAAGAAGAGTTCACTCGGAAGATGCAAGAACAGGAGGTCTTCTTTAAAATGAGTGGGGAATCAGAATGCCTGAACCCCACTGCCCAAAGCAGAGTTTCTAAATTCTACCCTATTCCTAGTGTCCATTCCTCTGGTTCATAACCCAGATCATATGAGGCAGCAGAAGGCTCTGTAGGTGCAACATCAGCCTGGTGCGCCTTCTCTGTCTGAACTTCCACTGTATGTGACAGGAGGAACATTGGATTGAAGTTAATGAAGTTCACCTGAATATGGAGGGGACTAAACAGCATTTCAGCAATGGAAAACGAGTTAATTAGTAAATTGCCCACTCTTAAACTATGAATCCAAtggattaatattttatttctttttctgtaggCTGCTGGGAGTTTTGCATGGCTATGGCactagaagagattagacacacacacacttttgtcttGGGAAATTGGGAAAAAGCATCAGCTGACTAAAGTCTGTACAAGGGATCAAGAAGGCTGCTTTAGACGGTTTTCTGCTTAGCAACGGGGAGAGTGACGACAAAATGAGTTCCCAGCATGCTCTGTGTGCAGCCAACAACTGGTACCAGACTCCCAGCAGCAGGAGCACATCTGCACTGAGAAACAGTGCTTTTAGCAGATGCatcttattttattgttttgttctttttctgattttttttttttttttgtcagaaataCATATTCAGTGCATTTTCTGTACAACATTTACAATGCTGGCATATGTGTCCATACTACTCTTGCATGCTGAATCCTGAATGCTGGATTTGACTAAGAACTGGAGCTCTATGGACTTTACTCTCTTTAAGTCCCATTTTATGCTAGTAACGGCTTCGGTTGAAACCCTAGAGCTGCATATGATGCGTCACAGATCAGGATCTTTGCCACTGGGATAGCAACAAGTTATCCTGGGGATTTTATTTGACTGGACAGTGGAATTTAAACCTTGTGGCACTTAGGTGGtctaaagcatttttaaaattgatttggCTGATATACTGAATAGCTCATGttatgctgtaaataaaatcttaccattgtatttta

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53680 lncRNA downstream 99011 12906274 ~ 12906475 (-) True G45422
TU53642 lncRNA downstream 137030 12866108 ~ 12868456 (-) True G45395
TU53662 lncRNA downstream 143434 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA downstream 143434 12859045 ~ 12862052 (-) False G45415
TU53656 lncRNA downstream 158773 12846507 ~ 12846713 (-) True G45409
TU53880 lncRNA upstream 217746 13248942 ~ 13250377 (-) True G45586
TU53928 lncRNA upstream 276898 13308094 ~ 13310240 (-) True G45616
TU53934 lncRNA upstream 281754 13312950 ~ 13313156 (-) True G45622
TU54091 lncRNA upstream 399169 13430365 ~ 13430899 (-) False csgalnact2
TU54100 lncRNA upstream 433300 13464496 ~ 13464739 (-) True G45755
XM_034302751.1 mRNA downstream 48570 12945709 ~ 12956916 (-) True erlin1
XM_034302750.1 mRNA downstream 48758 12945709 ~ 12956728 (-) False erlin1
XM_026940390.2 mRNA downstream 50238 12945709 ~ 12955248 (-) False erlin1
XM_026941562.2 mRNA downstream 88424 12912810 ~ 12917062 (-) True znf511
XM_026944730.2 mRNA downstream 128246 12875214 ~ 12877240 (-) True si:ch211-217g15.3
XM_026943905.2 mRNA upstream 23219 13054415 ~ 13091908 (-) False kat6b
XM_026943915.2 mRNA upstream 23219 13054415 ~ 13091656 (-) False kat6b
XM_026943900.2 mRNA upstream 23219 13054415 ~ 13091656 (-) True kat6b
XM_034301701.1 mRNA upstream 23219 13054415 ~ 13084061 (-) False kat6b
XM_034302727.1 mRNA upstream 66598 13097794 ~ 13229541 (-) True adka
trnal-cag other downstream 271204 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 336595 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 336921 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 365884 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 366163 12639252 ~ 12639323 (-) True trnae-cuc_8
XR_004577668.1 other upstream 1150695 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1748669 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2382745 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 3947935 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 3947935 16979131 ~ 16982729 (-) False morn4

Expression Profile