RNA id: XM_034302736.1


Basic Information

Item Value
RNA id XM_034302736.1
length 3723
RNA type mRNA
GC content 0.43
exon number 2
gene id si:ch211-198a12.6
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18958384 ~ 18963875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCACTTGGCGCCAGAAAGTGTGAGGTGCCAGCGCTCCTGCCGACAGTGTGCGCGAGTTTCAGCGCGCAGCCGTGCTGTGTGGACGCAAACAAGCCCAGATCTTCAGGCCGCCGATTCCCAAAAGCCTGCAAATAGCACTCCTACCGCTGTCTTTCACTTCGATCAAAGGACAAACAGGTTGGAAAGCCAGATCCCTCCTGGCTCGTGCTGACCAGAACGGTCCcaagcatttttttattctgagaaAGCGGTGCTCCTAGAGCAGCGCTAAGTTTCACTTAAACGGGAAGACGGAAGTCGTCAGGCTGGAGTGTGTCCTGATGGCTGAGTCAGAGACTGAGTGTGACACACCAGGCCTTGACACGCTGGGGTCTGAGTGTGTCATAACTCACACGCAAGTCGGTGACTTGCACTATGCAGCGGAGACTGAGATTATGACCCAGGAGGACAAGAGGCTTGACCTGGAAGCCATTCATGGCGATCTTGGGGCTGTGGCTTGTGTTGATGCCGTAACGGAGACGGACCATGACTACACTAAGTCTGAGGTACATCATGACCCGCAGTACTTTGGAGGCGCAGACATGAAAGGCAATGAGGCTCTGCTTGGTGAAGTGCTGCTGAAGGCAGAGATGGGTGGAGCTGGTGCAGAGCATGTAGTGAAGGATGAGTCAGACCATGGAGGAGAGCTGACAGTGGAGTCGGAGAATGGTGTCATCATTCATGAAGCCCAGGGTCTTCAGTGCAATGAGTGTGGGGAGATATTCAGCAGCATGACCGACCTGCATCAACACTTTGAAATCCATAAAGCAACCCATCCATACATTTGTATCCAGTGTGGTGAGAGCTTTGCTGTGGAAGCTAGTCTGAGAGGGCATATGAAAATACACATGAAGGACAAGGGCTATGCTACCACTGGTGTGGAGATGGTTGGTAAAGGGGTCATCGATGCATTCAATCTCAAACCACATCAGATGATGCACTCCCCTGAAAAGCCACACAGATGCTCTGAATGCGGCAAGAGCTTTGCCGCAGCCATCACGCTCAGAGAGCATATGAAAATGCATTCTGATGACAAACCCTACAAATGTACTCAGTGCAGGAAGAGTTTTGTCCGTAGGCGCCATCTAAAGAAACATCAGGAGCTGCATGCTCGCGAAAAGCCATTTACCTGCCCCCAGTGTGGGAAAGGCTTTGCTACGGCTTCTAATTTGAAACAACATCAGAAGACCCATGCTGGTGACAAGCCCCATCGATGCTCCCAGTGTGGAAAGTGTTTCGCAGCAGCAGCCACTTTGAGAGAACACCAGCGAATCCACTCTGGTGAGAAACCTTACAAATGTAACCAGTGCAGGAAGAGCTTTGTAAGAAAACGCCACTTGAAGAAGCACCAGCTAGTGCACCAGGGTGGCAAGCCCTACCGATGCTCTCAGTGCGACAAAGGTTTCAATCACTCTTCGTCCCTGTCACGACACCACAAAGTCCACCTGGAGGCCAAAATGTACGCCCAGCCCGATAAGGAGTTCCCCTTTGATACGCCAATGAAGAGGGGAATGCACACAGGCGAAAAGCCATACAGCTGCAACCACTGTGAGAAGAGCTTCAATCACTCTTCATCGCTGTCCAGGCACCAGAGAACTCATTCTGATGGGAAATCCTACACTTGTGCCCACTGTGGCAAGAGGTTTAATCATTCCTCTTCTCTTGCAAGACACCAACGTGTCCATTTGGATGAGAAGACCTCTTATAGTGCTATTCCCACAGGAAAGGGATTCCCTCCTACTACCATCCTGAAACAGAGGATTCTGCAGAGTGAGAAACCATATAGGTGTTCTCAGTGTGGAAAGGGTTTCAAtcactcctcctccctctcaaGGCACCACAGAATTCACATTGATCAGTAAGCTCACTGCTGAGGTGGCTGTGGTATTTTACAGTTTGTCCCAACTTCGTTTCAGGCCAACCTCAAATTTTTGTCTTCATAGAACTAGGAAAATCTAAAGTTTATTTGGGGTCTATAAATGGATCTTGAaggtatattaaaaatataattctgCTTAAGTCCTTTACCTTTACATTTTAAGAGCGATGAATCTCAATAACTGGTATGATTGACACTGAGCTGTTGCTGATCCTGCGCAGTGTGCATATAGAGCTTGCTGCTTTTAATTTGACATCTGTATGATAATGTAGCAATTTCATGCTTAATGACCAGGCCAGCAATACTCTTACGCATACCCTCGGAAAGAAATTAGGGCGGATAATTTCAGAGCCTGTTTTGAGCTTTAGACATATAATTGGTGACCAAGTAAAGTTTTTGGGAGACTGGAGGAACCCACCACCCAACCCCCAAGCAAAGTCCATGTATCTTTACCCATCGTGTCTTATTCATGGCCTGTTCAGATACTATCGTTTGTAAATAAGTGttgatttttatatacatatgtataggTGCGTGTGCAGTTCTTTTACACATTGAGCATTTTTGTATGACCCAGTCTGTCTTAACCatctttattttgaaaataggATGGTGCTTGAAAGTTTTGCTGGCTCCAGGAAAGCTGTTAGCAAAGGTGCAAGCCTGCATAAAATTTACTTCAAAGTTACTTAAGCTTTAGTCACCATTGCTTTCAGCTGCGATTAAAATCGGCTGAGCAGGGGTCAAATTACCTGAACAGGAGAGTCAAACTGTAGCATACTTTCCGGACTGAGCTTCTGGTCAGACAGCTTCATTCTAAAATGAGCTGTAAGAAACATGGGCTTGTAAAGAGGGGCAAATTTAGTCCTTCCTTTAGAATTGTCTGATTTACTGACTGACTCCAAAAAACCTAGTTTGacagattataaatcattgtaTACTTACAATTCAGTGTAATTTGATCTAAACGTTCCCTCTGAAGCATTGCTTAACTAGTTCCCTTTGGTACTCTACAACTTGTTACTAATGGGTAAATTGTGCATATTTGCGTTCAGACCTAACATCATCACTGTAGAACTAGTTCGgacatccatatatatatataataaccaGTAGTTAACTTATATTCTGGATACATGCAGCAAATTATCAAAATTTAGTCTAATAGATTGTGTGTAATTATCAGTACAATAAAAATAGCTTGCTCttgatttcatttctttcaaaatTCCATGAAGATACACTTTCTACTTAAAGTACTGTGTATGGGGGAAGATCTTTTACatactgatgtatttttttaatatggttTGGGTAATCTGAAAGGGAAAAGAGGAATACTGTTTTTATGGGAGTGAACattatattgaattttttttttctttttgaataaTTGTACTTCAACTCATAGCATAGGCTTTTTCATTGTGTTAGATAGGTGCCTTATTGCATGCTGTGTAGAAATGTATGTTGAGCTGTAATAGAAGAAAAAGGTTTGGCTCCTCTCCCTATGTTTGCATACTAaccaacatattttatttttgactttaggtaattttctgttttgcttttctgtatatgaatatatgtttatgctgttactgctgtcttTTAATTTCCCTGTCCATCAGCTGGTCTCATTGTAGAAAAAactaaaggtttaaaaaaaaaaaaaagagaagttacAACACCTTTGATCCATATTTTGATTGCCCTCTTAAGTGGTCAGATCTTGTTCCATGTCTTTACCCCATCTTTGAGTGGCACACACATGGATAAATAAAGGTTCTTGACtacctgtt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57821 lncRNA upstream 46208 18911486 ~ 18912177 (+) False zgc:110319
TU57584 lncRNA upstream 247090 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA upstream 248014 18708032 ~ 18710371 (+) True G48690
TU57371 lncRNA upstream 256479 18677230 ~ 18701906 (+) True G48482
TU57833 lncRNA downstream 3531 18967406 ~ 18967777 (+) True G48908
TU57836 lncRNA downstream 6923 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 50316 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 63132 19027007 ~ 19036636 (+) False selenou1a
TU57791 lncRNA downstream 63132 19027007 ~ 19036636 (+) False selenou1a
XM_026943192.2 mRNA upstream 2159 18939765 ~ 18956226 (+) True stox1
XM_026936555.2 mRNA upstream 25323 18913582 ~ 18933062 (+) False ccar1
XM_026936546.2 mRNA upstream 25323 18913685 ~ 18933062 (+) True ccar1
XM_026937020.2 mRNA upstream 46190 18902438 ~ 18912195 (+) True zgc:110319
XM_026937057.2 mRNA upstream 62987 18891221 ~ 18895398 (+) True eif4e1c
XM_026932800.2 mRNA downstream 4619 18968494 ~ 18973206 (+) True LOC113538004
XM_034301731.1 mRNA downstream 9762 18973637 ~ 18976601 (+) True LOC117596455
XM_026942747.2 mRNA downstream 13359 18977234 ~ 18981316 (+) True ftr14l
XM_026939350.2 mRNA downstream 19231 18983106 ~ 19010647 (+) True zgc:154058
XM_034302687.1 mRNA downstream 19231 18983106 ~ 19010647 (+) False zgc:154058
TU55884 other upstream 2721737 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2885318 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2886465 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3161181 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4590939 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 377475 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 377475 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 377475 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 377475 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 377475 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile