RNA id: XM_026938413.2


Basic Information

Item Value
RNA id XM_026938413.2
length 3355
RNA type mRNA
GC content 0.38
exon number 10
gene id si:dkey-196h17.9
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17926887 ~ 17933918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTGGACGAGCTCCCCTATTGTGGCACATTCTTCATCCTGAGTGGCCCGTTTAAATGTCAATCACAAGCCCATCGCCTCCTCCCCAGTCTTGCCATTACATTTCATAGACTACTTTGTGTACATGCAATACATTGTTTATGAGATCTACCGTTTCCTAATTATCCAGTGAAAGCTTAAAGAACCTGTAAAGAACCCTTATGCATTAACTGGGTATGTGTGTGGTACAAACTGCAAATTACTGGTAATAATCTTTTTAATACCCAGAACCTGTCAGGCATATGGAATTCAACTAAACTGTCTGGTACTTGCAAGTTGCTTACAcgaacattatttatttatttatttatttaaccaaatAGGCACCTAAATCCCCCCCAAAAGCTGTGAACTGCTTTGCTATTGATTAGCCTATAATTTTGCATATTACTATGAATCGACTTGTTCACAATTAAGGTGACAAAAAGGCCTATTAACAGGCAGTGGAATAAACCATATTCTCATATTCCCTGTTCACAATCAGAAAACACTGCAACCCCCATTCATGACATTTCCTCGTAATCTGACTAGTAGCGATTTCTGTGTGAATGTATGAGAActggaatatttaatatttaatgtctattgatgaaaacattatttctttttagctCTGTCTGATGTTTATGGCGAATTGACTGTGATTCACGTGATTCATCAAAATGCTATTATAgaataaatatcaaatatttttagGTACCTAGTATGTTACAGAATGCTGTGTAAAAGGCATTTTACAATATAAACAAGCCAATAGGAAAAGCTAgggaatttttattattattatttttggaaaaatgaaaGCGCTTTGAGGTAATGGGGAAGTACTGTTCCTGGGGTTATTTGCATGCGGTGGATGAAGCTGGTTGGTTAATGTCTGGGGAATACCAGCCAGGGTGTGTATTAAAGCTGGCTGCTCACAGCTTGTGGATAATAAACGAGGTTTGATATAATCCGAGctctttataataataacaacaacaacaacaataataataataaatacattgatTCCATTTAGAAGCTTTGCAGTAGAGAGGACACTCATAAAATGGCAAGGATTTCGAAAACCTTGAAGCACTTGTTTAGGAAAAAATGCCGAGTTAGGGAAGAAGAAAGTTTGGTGAGCCACATGTGCTCAGAGCCCTCTGAGCCTGCAGATGaaGATCCCAGACAACAAAATGATTGCGTCATGAACACAACAGATCAGTTTGGTGCAGATCCCCAAATGTGTGCTCAAGACTCAGTCCTTCCAGTTCTCACAGCTACACTTACTGGAGACAAATATATCCAGGAGCTAAAAGACGCAGCTGAGCAGGTGAAACAGTGTGGTATCACACCTGATGGAAATGGGGGCTCTGGCAGCTATTCTCAGTGCAGGTTGAAAGACTACCTCACAGCAGTGGAAAAGTTTGTAGATAACAACTCTCCTGCACTGCCAACAAACTCACAGCCACACACTGGGGAATATCTGAATGATGCTATGAGTTTGATACATAGCAAGGTGATTTCCTTAGTTCCAGTCTTAGATGATTCAGTACTAGAAAGTTACCTGGTTGACAGCTATACTCGCCGCCTGTTTGGCATGTTGTTCTTGTTAATGGATAGAAGTTCATCAGTAAAAGACTCCTTCTTCCTTCTACAATGGGTGAAAAAGACATACTTTAAacaGGACCATAAAGGATGCCTGAAAACACAGAAAGGTGTACTTAGTGTATCAGACCCTTTCTTGTTGGCTGACTGGTTGGAGTATTCAAAGCAGAAACTCCTCACACTTCTTCAGAACAATATCTCAACTACCCTGCACAACATCTTGCAGCAGGATGAGCTTAATCGTGTTTATGATGACAGCAATGAGGAGGCTTTCATTCAAGTCCAACTTGATGTAATACAGTGTCTGGATGCTCCCATTCAGGCAAGTAAAACAGTCAGCCACACCCTTAAAAATGCTGTACAGAGACTTTGTTGCGATGAACTTCACAGTTTCATACAGAGGTATACGAATGCACAGGGGGCCGATGAGGGAAATTTACTGCGTCACTTCAAGACACTTTATACCTGTAGGCAACTCAGGTCCTATGCTCTGAGCATTATTGATTCAAACAATAACACAGATTCATCCACTCTCCTGATGTTAGGAGACATGGAGACTCAGTCTTTATTCAGTGTACAGCAGTCGTTTGCAAACATAGCAAAGgACAATTTAAAGAAGTATTTCAACAAAGAGGATGGACATTTGAATAATATGATCGACTTAATTCAAAAAATGCTTGCAACTTTACCACAAATGGAACAGGGAGATGAAACAAAACAGCTTATTGTAAAAGCAGCATACCACAGTGTTACCAGAGCATACCTAGACTGTTTAACGCAGAGAAAGTACAAAAAATTGGAAAACAGATGGAATGATGTGGAAAAGAGGATAATGATGGATGCTGAACGTTTCCACTTCAGCTTTGCACAACAGAATGGAAGTAATGATGAGCAGAAAATGGTCCTGTTGAAAATCGGTGAGATTCTGCAGTGCCGTAATGTAGATACTCTTAAGCTTCACTGCTCAGAACTGTACATCACTTTCCCTAAGGAGAGTGAGGAGTACATACCTGCCCTACTGCACTGGAGAGGGGAATTGTCAAGACGACAGATTAAGAAAGTAATTGTTGTGAGTAGGGAAGTTGAAGATCACATCAGAAATGGAGACCACGTCAGACCACATCCCCGTATGTACTGGTGGTGCTGTCTTTGTTGAATATATAGATGAAGCAGATGACCAATGTTGGGCCCACGACTTTATTGTGtgcatgagtttttttttttcctaggttTTCTCAAAGACACTATTGTAAAACCAATCATGACACTGATTTTAAACTACTTTAACTTTGACATTCTTTAACTTTGACTTTTTTAACTACTTTAACTTTAAACTACTTTAACTTTGACATTCCAGTTATTACTTGATTTATTGTACTTGAGTTGTATTAATTCTCATCATAATTATTCCAGTGTTGCTAGTCCAGAAACTGAAATTCTaaaagattttagatttttagtcAACGTTTATATTTCGGTATTTCAGCTAGTCCTTAGGAGGTGGAATGTTGCATTGGCCTTCTTAACgttattttatagttattacaTGATTTTTCATCATGTTGGACTGGCCTTGTTTGCACAGTTGTGTTTACCTAATGTCTAACTAAGCTAACAGATATTAAGCTTTAACAAttgatttgtttaaatataaacatgaaatgtTGTGTCTGCTCATGCACTTCAAAAGTGCAAAGCTCTATGTGTCATGTAACAACATTTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57104 lncRNA downstream 108283 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 125001 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 161222 17762794 ~ 17765665 (-) True G48254
TU57076 lncRNA downstream 199679 17716235 ~ 17727208 (-) True G48250
TU57070 lncRNA downstream 216511 17708921 ~ 17710376 (-) True G48248
TU57216 lncRNA upstream 55193 17987422 ~ 17987631 (-) True G48368
TU57280 lncRNA upstream 105458 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 151428 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 155275 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 234791 18167020 ~ 18173182 (-) False G48476
XM_034302564.1 mRNA downstream 24568 17896613 ~ 17902319 (-) True si:dkey-45k15.1
XM_026940120.2 mRNA downstream 83098 17822585 ~ 17843789 (-) True ninl
XM_026933610.2 mRNA downstream 146360 17719023 ~ 17780527 (-) False gbf1
XM_026940704.2 mRNA upstream 33518 17965747 ~ 17971182 (-) True ckba
XM_026940722.2 mRNA upstream 33518 17965747 ~ 17969554 (-) False ckba
XM_026944048.2 mRNA upstream 69428 18001657 ~ 18010593 (-) False bag5
XM_026944039.2 mRNA upstream 69428 18001657 ~ 18009863 (-) True bag5
XM_034303123.1 mRNA upstream 115196 18047425 ~ 18054897 (-) False ttl
TU56951 other downstream 265503 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 352465 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 352465 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 450826 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 944158 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 398139 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1384258 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1703609 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2425705 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2425759 20357988 ~ 20369097 (-) False gng2

Expression Profile