RNA id: XM_034302847.1


Basic Information

Item Value
RNA id XM_034302847.1
length 2431
RNA type mRNA
GC content 0.40
exon number 11
gene id si:dkey-196h17.9
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17926887 ~ 17933918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGGGCAGCTGAAACAGACCACTTGAAACCTTGAATACGTCTATGTTTTTGGGGAACACTAAAGACACACAAATCCATTTCTCATGCCTCGGGATTTTCTAACCGTCAGATGGGAGTGCAAATAGGACAAGGAGAAGCTTTGCAGTAGAGAGGACACTCATAAAATGGCAAGGATTTCGAAAACCTTGAAGCACTTGTTTAGGAAAAAATGCCGAGTTAGGGAAGAAGAAAGTTTGGTGAGCCACATGTGCTCAGAGCCCTCTGAGCCTGCAGATGaaGATCCCAGACAACAAAATGATTGCGTCATGAACACAACAGATCAGTTTGGTGCAGATCCCCAAATGTGTGCTCAAGACTCAGTCCTTCCAGTTCTCACAGCTACACTTACTGGAGACAAATATATCCAGGAGCTAAAAGACGCAGCTGAGCAGGTGAAACAGTGTGGTATCACACCTGATGGAAATGGGGGCTCTGGCAGCTATTCTCAGTGCAGGTTGAAAGACTACCTCACAGCAGTGGAAAAGTTTGTAGATAACAACTCTCCTGCACTGCCAACAAACTCACAGCCACACACTGGGGAATATCTGAATGATGCTATGAGTTTGATACATAGCAAGGTGATTTCCTTAGTTCCAGTCTTAGATGATTCAGTACTAGAAAGTTACCTGGTTGACAGCTATACTCGCCGCCTGTTTGGCATGTTGTTCTTGTTAATGGATAGAAGTTCATCAGTAAAAGACTCCTTCTTCCTTCTACAATGGGTGAAAAAGACATACTTTAAacaGGACCATAAAGGATGCCTGAAAACACAGAAAGGTGTACTTAGTGTATCAGACCCTTTCTTGTTGGCTGACTGGTTGGAGTATTCAAAGCAGAAACTCCTCACACTTCTTCAGAACAATATCTCAACTACCCTGCACAACATCTTGCAGCAGGATGAGCTTAATCGTGTTTATGATGACAGCAATGAGGAGGCTTTCATTCAAGTCCAACTTGATGTAATACAGTGTCTGGATGCTCCCATTCAGGCAAGTAAAACAGTCAGCCACACCCTTAAAAATGCTGTACAGAGACTTTGTTGCGATGAACTTCACAGTTTCATACAGAGGTATACGAATGCACAGGGGGCCGATGAGGGAAATTTACTGCGTCACTTCAAGACACTTTATACCTGTAGGCAACTCAGGTCCTATGCTCTGAGCATTATTGATTCAAACAATAACACAGATTCATCCACTCTCCTGATGTTAGGAGACATGGAGACTCAGTCTTTATTCAGTGTACAGCAGTCGTTTGCAAACATAGCAAAGgACAATTTAAAGAAGTATTTCAACAAAGAGGATGGACATTTGAATAATATGATCGACTTAATTCAAAAAATGCTTGCAACTTTACCACAAATGGAACAGGGAGATGAAACAAAACAGCTTATTGTAAAAGCAGCATACCACAGTGTTACCAGAGCATACCTAGACTGTTTAACGCAGAGAAAGTACAAAAAATTGGAAAACAGATGGAATGATGTGGAAAAGAGGATAATGATGGATGCTGAACGTTTCCACTTCAGCTTTGCACAACAGAATGGAAGTAATGATGAGCAGAAAATGGTCCTGTTGAAAATCGGTGAGATTCTGCAGTGCCGTAATGTAGATACTCTTAAGCTTCACTGCTCAGAACTGTACATCACTTTCCCTAAGGAGAGTGAGGAGTACATACCTGCCCTACTGCACTGGAGAGGGGAATTGTCAAGACGACAGATTAAGAAAGTAATTGTTGTGAGTAGGGAAGTTGAAGATCACATCAGAAATGGAGACCACGTCAGACCACATCCCCGTATGTACTGGTGGTGCTGTCTTTGTTGAATATATAGATGAAGCAGATGACCAATGTTGGGCCCACGACTTTATTGTGtgcatgagtttttttttttcctaggttTTCTCAAAGACACTATTGTAAAACCAATCATGACACTGATTTTAAACTACTTTAACTTTGACATTCTTTAACTTTGACTTTTTTAACTACTTTAACTTTAAACTACTTTAACTTTGACATTCCAGTTATTACTTGATTTATTGTACTTGAGTTGTATTAATTCTCATCATAATTATTCCAGTGTTGCTAGTCCAGAAACTGAAATTCTaaaagattttagatttttagtcAACGTTTATATTTCGGTATTTCAGCTAGTCCTTAGGAGGTGGAATGTTGCATTGGCCTTCTTAACgttattttatagttattacaTGATTTTTCATCATGTTGGACTGGCCTTGTTTGCACAGTTGTGTTTACCTAATGTCTAACTAAGCTAACAGATATTAAGCTTTAACAAttgatttgtttaaatataaacatgaaatgtTGTGTCTGCTCATGCACTTCAAAAGTGCAAAGCTCTATGTGTCATGTAACAACATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57104 lncRNA downstream 108283 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 125001 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 161222 17762794 ~ 17765665 (-) True G48254
TU57076 lncRNA downstream 199679 17716235 ~ 17727208 (-) True G48250
TU57070 lncRNA downstream 216511 17708921 ~ 17710376 (-) True G48248
TU57216 lncRNA upstream 53504 17987422 ~ 17987631 (-) True G48368
TU57280 lncRNA upstream 103769 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 149739 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 153586 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 233102 18167020 ~ 18173182 (-) False G48476
XM_034302564.1 mRNA downstream 24568 17896613 ~ 17902319 (-) True si:dkey-45k15.1
XM_026940120.2 mRNA downstream 83098 17822585 ~ 17843789 (-) True ninl
XM_026933619.2 mRNA downstream 146360 17719023 ~ 17780527 (-) False gbf1
XM_026940704.2 mRNA upstream 31829 17965747 ~ 17971182 (-) True ckba
XM_026940722.2 mRNA upstream 31829 17965747 ~ 17969554 (-) False ckba
XM_026944048.2 mRNA upstream 67739 18001657 ~ 18010593 (-) False bag5
XM_026944039.2 mRNA upstream 67739 18001657 ~ 18009863 (-) True bag5
XM_034303123.1 mRNA upstream 113507 18047425 ~ 18054897 (-) False ttl
TU56951 other downstream 265503 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 352465 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 352465 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 450826 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 944158 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 396450 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1382569 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1701920 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2424016 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2424070 20357988 ~ 20369097 (-) False gng2

Expression Profile