RNA id: XM_026938498.2


Basic Information

Item Value
RNA id XM_026938498.2
length 1502
RNA type mRNA
GC content 0.51
exon number 7
gene id acta1b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12714631 ~ 12717322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATGTTCAGTGGGCGGGAAATGAAGGTGATCGGGTATAAATGTTGCCCAAGGCCAGCAGTCACCCTGTAGCTGGAACCAGCAGAGGTTTCATTCTGCACTGAGCTTCATCTGAGAAGGACACCACCACAGaacCTGCCAagatgtgtgatgatgatgagactACCGCCTTGGTGTGCGACAACGGCTCAGGCCTGGTGAAGGCTGGCTTTGCCGGTGATGACGCTCCCAGGGCTGTGTTCCCTTCCATCGTTGGTCGCCCCCGTCATCAGGGTGTCATGGTGGGTATGGGTCAGAAGGACTCCTATGTAGGTGATGAAGCTCAGAGCAAAAGGGGTATCCTCACTCTGAAGTATCCCATTGAGCATGGCATCATTACCAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTCCGCGTTGCCCCTGAGGAGCACCCCACCCTGCTCACTGAGGCTCCCCTGAACCCCAAGGCTAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTGTCTCTGTACGCTTCTGGCCGTACCACTGGTATTGTGCTGGATTCTGGTGATGGTGTTACCCACAATGTCCCCATCTATGAGGGTTATGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCTGGTCGCGATCTGACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTACTCTTTCGTCACAACCGCTGAGCGTGAGATTGTGCGTGACATCAAGGAGAAGCTGTGCTATGTTGCTCTGGACTTCGAGAATGAGATGGCCACTGCtgcttcctcctcctccctggAGAAGAGCTATGAGTTGCCTGATGGTCAGGTTATCACCATTGGTAATGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCTTTCATTGGTATGGAGTCTGCTGGCATCCATGAGACTGCCTACAACAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTGTATGCCAACAACGTCTTGTCTGGTGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATTGCCCCACCTGAGCGTAAGTACTCTGTATGGATTGGTGGCTCCATCTTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAATACGATGAGGCTGGACCCAGCATTGTCCACCGCAAGTGCTTCTAAATCCACCATCGTCGTTATCATCTGCGTCTTCTCGCCATAAACCGAGCAGCAGTGGAGCACTCCGTTGGCAAGGGACAGAATTacttaaaatttattttgtaaccCAGTGTTACACAGTGAATATACTTCAGTGAAGATTAAGCAACATCGAGATGATTGACATGCTAAGTCATACAGCATAATGTGAAATGTACatacatattaatttattaaagtcCATTATTT

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10354 ACTA1; actin, alpha skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53325 lncRNA upstream 40008 12674408 ~ 12674623 (+) True G45170
TU53285 lncRNA upstream 66225 12647895 ~ 12648406 (+) True G45153
XR_004577794.1 lncRNA upstream 71327 12639317 ~ 12643304 (+) True LOC117596823
XR_003404309.2 lncRNA upstream 215612 12489514 ~ 12499019 (+) True LOC113542444
TU53152 lncRNA upstream 398761 12315533 ~ 12315870 (+) True G45040
XR_004577841.1 lncRNA downstream 16110 12733432 ~ 12739226 (+) True LOC117596851
TU53595 lncRNA downstream 93597 12810919 ~ 12811250 (+) True G45351
TU53604 lncRNA downstream 103534 12820856 ~ 12821389 (+) True G45360
TU53620 lncRNA downstream 152681 12870003 ~ 12870223 (+) True G45376
TU53723 lncRNA downstream 242768 12960090 ~ 13031136 (+) True G45453
XM_026938485.2 mRNA upstream 1842 12702450 ~ 12712789 (+) True abcb10
XM_034303040.1 mRNA upstream 99424 12613042 ~ 12615207 (+) True LOC117596891
XM_026944249.2 mRNA upstream 104792 12607529 ~ 12609839 (+) True LOC113545096
XM_026944537.2 mRNA upstream 110882 12601078 ~ 12603749 (+) True LOC113545271
XM_026943052.2 mRNA upstream 120487 12573987 ~ 12594144 (+) True frmd6
XM_026945265.2 mRNA downstream 1583 12718905 ~ 12723241 (+) False ccsapb
XM_026945276.2 mRNA downstream 1585 12718907 ~ 12723241 (+) False ccsapb
XM_026945296.2 mRNA downstream 1735 12719057 ~ 12723241 (+) False ccsapb
XM_026945287.2 mRNA downstream 1736 12719058 ~ 12723241 (+) True ccsapb
XM_026936770.2 mRNA downstream 42375 12759697 ~ 12762641 (+) True pdcd2
trnat-ugu other upstream 46745 12667814 ~ 12667886 (+) True trnat-ugu
TU53286 other upstream 71436 12639836 ~ 12643195 (+) False LOC117596823
trnay-gua other upstream 78225 12636320 ~ 12636406 (+) True trnay-gua
XR_004577785.1 other upstream 948217 11745749 ~ 11766414 (+) False LOC113544122
trnag-gcc other upstream 1007626 11706935 ~ 11707005 (+) True trnag-gcc
XR_004577802.1 other downstream 212237 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 212237 12929559 ~ 12936802 (+) False spef1
XR_003404144.2 other downstream 265084 12982406 ~ 12999962 (+) False col17a1b
TU53738 other downstream 314957 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU54033 other downstream 780770 13498092 ~ 13501046 (+) False pcbd1

Expression Profile