RNA id: XM_026938591.2


Basic Information

Item Value
RNA id XM_026938591.2
length 6564
RNA type mRNA
GC content 0.50
exon number 20
gene id cep170aa
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20802370 ~ 20855702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcctcctcctctcctctcatttcctctcctcccctctcctctgctctctcAGCCCGCTGTGTGTCGCCGCTGTTTGTTAGGAATAACGTTATTCCTGAGCAACCAGAGACGCAGGAGCCACGCATTGGGCAGGGCACTGAAAAACCGTCTAgctgctatacacacacacacacacaaatctgtgCAGAATAGAAAAAGGGgATGACGTAGGGGCTCAGGCCGGAGACAGAAAGCAGAGATGAGTCTGACATCCTGGTTCCTGGTGAGCAGCGGGGGCACACGCCACCGTCTGCCCCGTGAGATGATTTTTGTGGGGCGTGATGACTGCGAGCTCATGCTGCAGTCTCGCAGTGTAGACAAGCAGCACGCCGTGATCAACTATGAGCCAGCAAGTGATGAGCACAAAGTGAAGGACCTGGGGAGCCTTAACGGGACATTTGTGAACGATGTTCGAATCCAGGAGCAGATGTATATCACTCTGAAGATTGACGATAAGCTAAGATTTGGATATGATACCAACTTGTTCACTGTGGTCCGAGGAGAGCTTCATGTTCCAGAAGAGGCTTTAAAGcatgagAAGTTCACCAGTCAGCTTCAGCTGGGGAAGAAGCCAGTCTGCACAGAGTCGCCCAAAACACCCAAGTCTCCTACAGCCAAGGGCTCAGAGAGCAAAGCTGCCGAGCCCGTCACTGAACCTCCTGCCAAAGTGGTCGAAACCTGCAAGGCAGATGAAAAAATGCCAGGTGatactgcagcactgcacagaGGAACACCTTTGTATGGACAGCCTTCTTGGTGGGGTGACGGTGATGCTGATGACGAGAACTCatttaaacaggaaaataaagcaGCAGGGAAAAAACAGGAGACTCCTGGGACAGACACCAAGGAGACTAAGCGGACCGAGAGAGCTAAGGAGAATGGTGTGAGCGCTGCAGGCCCTGAGCCCAGCTACTTTGAGATCCCAAGTAAAGACGGCCAGATGGCAGAGGACAGCATCCACGAGGTCCCAACCAAGGACACGGAGAGCAGCGCAAAAGCCGCCCAAGCTAACACCTCCTTCACCATTGAGTTTGATAACACCTCTCCAGGGAAAGTGACCATTAAGGATCACGTGTCACGTCCAAGATCGAAAAAATCTCAGCCAGGGAGTAAAGAGCTCAGCAGCCTCCAGGCAGCCATCATGGCCTCGGAGAGCAAAGTGGCCGACTGGCTCGCACACAACAATCCTCCCATGGTGAGGCGCGAGTCCACAGAGGAAGACAGCAAAAGCATTAAGAGTGATGTCCCTGTCCACCTCAAGAGGCTGAAAGGCAGCAAGCACGAGGATGGCACCCAAAGCGACTCAGAGAACGGTCTTGGCCTGCGTTTTGGTAGCCGACGCCACGCTGCTCTGGAGGAGCGCTTGAAGGCAGCTGGCCTCACACGTGCCAAAGTCACTGGGGCAGAGGGCTCGGGCTCCACCAGCCGCACCGCCTTCACCATCGAGTTCTTCGACGAGGAGAACCCTCGCAAACGCCGTTCCTACTCCTTCTCCCAGACTGCACCACTTTTGGGAGGTATGGCAGGAGAGGGACTGTGTCCGGCACCACCCTCCCATCCTAAGGGCACTTCATCAGCGCTGGCAACGGTGGCACCTACAGCAGCACGGCTGCTGCAGAAGAAAAGATCAGAGGACAAGACGACGATCCCCGGAGATGAGACACAGAAGCAGGACGATGAGCAGAGCGACAAAGGCACCTACACCATCGAGCTGGAGAACCACAAccctgaggaggaggaggcccGCCGCATGATTGATAAGGTGTTTGGGGTGGAGAACCCTCAGGGTCCCGGTTGCCCAGTGAAACAGAAAACTAAGGACAGTAAGAAGGCCAGCAGCACTAAAGCTGAGgGCCTTTTGGAGGAATCGGTTGCAGTTGGCAGTGCACACTGGGTTTCCCAATGGGCCACTTTAGCTGCTAATCACACAAGAACTGATCCTGAAGGTTCCGGGGCAGAACCCACACACTTCGTCCATCAAGAGCGAGAAGCTGATGCATTTGAGTCAGGTGTGTCTTTGAGGAGCACCAGCTCTGCTACCTCCAGCCAGGCTGAACGGAAGAGGAGGACACTGCCTCAGCTCCCCACTGAGGAGAAAAGCAGGCCGGGGAAGTCCTCCACCACCATAGGACTACGCTCTGAGATCGGTGAGAAGCAAGACACAGAACTCcaagaaaaacagcacaaagGAGATGGTGAATGTGTTTCCACTCCCACCAAGAAAGACATTACGAGTGGAAAGACAAATGAAGTGCAGACAGCCTCTTCCAAGCCACCTGCGCCTCCTGTGGGAGTTGTAGAGAAGCAGAGTGAGGAGTCTCGCAGGAGGCGTGCTGAGGACAGGAGCAAAGTGAGTGATGGCGAGCGGAGCGGGAAGCCCCTGGTGCGTCAAGGCAGCTTTACCATCGACAAGCCAAGTGCCAATGTGCCACTTGAGCTTATCCCACGCATCAACCAACGGCAGTCTGGCGGCCGAGAGCGCAGTGACTCAGCTGGCAGCATGGACACGGCCACACTGCTCAAAGACACAGAGGCTGTTATGGCCTTTCTAGAGGCCAAGCTGCGGGATGAGAAAAAGCTGGACCCGTCGCCACCCCCTGGCTACCCTTCAGGACGCTCTTTTTCCCCAGAGTTGGATGCTGATGCAGCTAAAGCAGCAGGCCGCACTGAAATGCCACAGAAGCGCCGTTCTCTCAGCAGTCTGCACAGAGAGAAAAGCAACATGAGCTCAGCTGGAAAGAGCACAACCAATGCACGGGATCGACTGGAGAGGAAAGCCAAACCCAAGACCTCAGATGGGCGTCTGGATACCCGTCGCTCTGCCCATACAAGTCAGCGTGCCCGCCAGCCCTCCATGGACCTGACAGATGACGAGCAGACATCCTCGTTGCCCATTTCTGACGTACTCTCTGATGACCAGGAGAATGGGCGTAACCCATTCACCTTCACTGATGACTTGCTGCACTCCAAACTGGACTCCTCTAAAGTTGCTAGAGCCGCTAAATCCAGCAGGACGCCCCAAGCCAGCACTGCTACTATGGGCAAGCCTCAGTTGCCTCAGCCTCGGCCCACAAGGGCATCTCTTCTGAGACGTGCTCGACTTGGAGACACATCTGACACAGACCTGGCAGATGCGGACCGGGTATCAGTTGCATCCGAAGTGTCCACAACCAGCTCCACATCCAGGCCACCATCAGGCAGGAAGGCACCATCTCGCATCGACATGCTGGCACAGCCCAGACGCACCAGGCTTGGGTCCATGTCAGCGCGCAGTGACTCAGAAGCCACAGTGTCCCGCAGCACTACATCGAGGATATCAGCTGAGACAGCTCTGAGACTGGGCTTGCGCCCGACCAACCCAGCCGACAGCAAGCTGAACCCACGCCTTCGGGCAAACAGTGTCTCCAAGCTGACAGACACCAAAACCAAGACCACGCCATCCATCTCCAGTGCTCCAGCAGAGCACATTCACACAGAGATGTCTCAACCAGAGCCAGAGGATGACCTAGCAGACGAGGAGCCCATGGCCAGCAGCAGGTGGCGGCGACTTAATACAGAATACGGCTCAACCTCTGAGGACGAGTTTGGCTCGAACAGGAACTCCCCCAAAGCCGGGCGTCTGAGACCAGGCACTGCTCTGCGTACCAGTAGACTGAGCAGCTCGGGCACAGTGACAGCAAGCCCGGGCAGCATCACCATCAAACACAGGATGAGGGAGCAGGAGGAGTACATCAGAGACTGGACAGCTCACAGCGAAGAGATTGCCAGGTTATTCCCCTGTGTGCGCAGGATCAGTCAGGACTTGGCCAAGGATCTGGCCATTCTGGCGCGAGAGATCCATGACGTGGCCGGCGAGATCGACTCGGTCAGCTCCTCCGGCACAGCACCAAGCACCACGATCCCCCCTGTGGTGCAGACCAAGACTCCAGAGATGAACGGCCGACCAGTGGAGCTGCGGCCTCGAGCCCCGGACAGTCTGGACCCCCAGCATGCCCTGCGCAGACGCACATGGAACCGAGATGAGGTCAGACCGGCAGTGCTAGACAGCTTGCTGCTGACATCAGTCGCTCAGTTGTCCTCCAAAGTCCGCCAGTCTGTGGACAAAACAGCAGGCAAAATCAAGATTTTGTTCAAGGACAAGGACAGGAACTGGGACGACATTGAGAGCAAACTGAGCTCCGAGACTGATATACCACTTCTCAAAACCACTAACAAGGAAATCTCGACCATTCTAACAGAGCTGAAGAGGGTGGAAAAGCAGATCCAAGCCATAAATATCATGGTAGACCCTGATGGAACCCTCGACGCTCTTACCAGTCTAGCCCTGGCGAGTCCCACCACACCCAAACCCAAGCCCAGCAGTGGAGCCTCCAAACCCTCCTCCACCATCTCCCCTAACCGAGAGCTCCCCAGCCCTGGACTGAGCCGTCCTCAAGCCAGTGGAGAGGCGAGCGCCATTAGTAACAAGTGAAGGACAAGAACCCTCAGAATTGAGCGAACTGGACCTCTAATACCTAATTTTCTCTGAACTGATAGACCTTTACCTGTACATACTGTCTGTACCCCTCCCTTCCTGCGCTCCACTGGAATGTCCATCTTTCTCCAAGTGAAGTTGTTGAAAGTCACACCTGTGGATTTGGACAGtgatatacacatatacagtgcagctacacaagcacacacagctgctggtGAAGAAGAGGTGAAGGGCCATTGATCTGAGGCTTGTTATGCTGGACTTCTTCCTCAAGTCTGTGTGTCTGATGTTAGAACCAACTGCTTGTATGTGCTGCAAGTGTGTATGCGCTCATCCAGGCATGAAGCAAGTGGACTTCATAATTCAACTTCAGCAAAAACGACTCCGAGTGCCTGTCTTCTCTCCTCTGTAAGCATTCTCTTCTGCGAATAGCAACTTCTTATAAAGTGACTTTTGTGTCAGAAATGAGATGGTGTTGGTTTAAAAGACTTGACAGAGATTTAACCTTGAAGGGAAACTTTATGAGAAGTGTTAAAGATTACGAagctaaacatgaaccagcttACCAAAGTAAGTCAAATGCTATGCGTGCACTCAACAACTGTAAATTTCATCCAGTTTAttcaactgatttttttttggaaatctgATTTCTTGATTACACAAAGTGCATTTACGCTATTAAAATTAGTATAAGTCAGCTCAGTGATTTTGGCTCCAGTAAACAgaacatttactgaattactCAATCTTCATGCACTGATTGTTTTTGTAACCTTTTAGACTGATGGATAGGTAGCAAACTTAGTACAAGGTTCCAATATCAATTTAAAAATCAGCAAATGTCTGACATTTAGCCATCGTTTCATTTTCCCAACGTTGGAAGGAAGTGTTCGGAAAATATGCAGTATTAGACAATGTATTAGTGAAATGTAACATGGTTATGTGTTGAACATCTCTCATTTGCTAAGATCTGTGTGCTTTGTGTTACTGTGACCTGAGCCTTCGAACAAACAGCCTTTAATGCAAGGCTCATTCACATTCTGAATACGTTACGGTCAGTCGAACACGTTACGTTTTAAATCTCAATACACTAACGTTCTCTAATCAGAGTATGCAATTACAGGGAATTAGATACGCAATAGTGAGTGTTGGACAGTTTGTCAGCATTTTCAGAAATCTCCAAAAGCTCATTAGTCATGTTTTTCATGAAGGTATTCCAGCATATGgtgtatgtactgtattgtCTTACTCTCCTGTCACCGCTTGCTGCTTGGCTGTATTTATGTTCATGGGGAAGGGTGGGGAATGAGCTTAACCAGCCTTTCATTGTGAATCTGCGTGTCGTAGAGAGAGTAGTGCGACTGTCATTAGGAACTGAAACAATAGTGAAGATAGGTacaggacttttttttgttgattaatGTATCAGCAAAGTGGCCACTGTGGAAAATCTAGTTCTTGGGCAGTTTAGGAATGAAAATCATAATGTAGCGTGCACAATTGTCATTTTAAGGTTCCTGGACTCCTGTAAGTTAATGTTATGTGTTTTAAAGGCCATACAGGGAATAAAAGGACATGACACCAAAATCATATCTGTACATCATACTGCTCTCAttacagaatttattttcaGTGGGACGATCCTCCCGCCCCCTAAACACgcctatcattttttttaaacagtagtaTCATTTATAATACtattgtaaatgttttacacGACGGGGAACAGAAAACATGCTtggtacagttttttttgtttgtttgtttctttttttgtttgtttcagtttaCATTCGCATCTGTAAAATacaatttttgttctttttcattgtttttgataaatgtgtttatttattttggtttatttttgttcaatGCCTTGAATTTTTTTGCAGCACATTTTTGTTGGTatttcaattttgtttttttatagaaTCATTTCCATGCTCTCAATAAAGGAGAAAGTATTCCTGGACCCTAATTAAACATAATTGTCTGCATATATCCTGCATTTCAATAAAGTCCTTGATCTAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59007 lncRNA upstream 86073 20619938 ~ 20716297 (+) True G49857
TU59015 lncRNA upstream 213140 20585604 ~ 20589230 (+) True G49864
TU59014 lncRNA upstream 216870 20580801 ~ 20585500 (+) True G49863
TU59001 lncRNA upstream 278321 20523816 ~ 20524049 (+) True G49853
TU58889 lncRNA upstream 409783 20392367 ~ 20392587 (+) False pprc1
TU59323 lncRNA downstream 94868 20950570 ~ 20950991 (+) True G50140
TU59334 lncRNA downstream 107560 20963262 ~ 21043534 (+) True G50145
TU59354 lncRNA downstream 262360 21118062 ~ 21118862 (+) False camkmt
TU59475 lncRNA downstream 323904 21179606 ~ 21179811 (+) True G50284
TU59491 lncRNA downstream 342575 21198277 ~ 21198508 (+) True G50297
XM_026942277.2 mRNA upstream 57043 20648884 ~ 20745327 (+) True akt3a
XM_034302773.1 mRNA upstream 57043 20648884 ~ 20745327 (+) False akt3a
XM_026937214.2 mRNA upstream 200322 20573244 ~ 20602048 (+) True adss2
XM_026938378.2 mRNA upstream 249776 20525852 ~ 20552594 (+) False dctn1b
XM_026942324.2 mRNA downstream 22184 20877886 ~ 20885712 (+) True abcg8
XM_034301821.1 mRNA downstream 131187 20986889 ~ 20996378 (+) True ppm1ba
XM_026939903.2 mRNA downstream 146667 21002369 ~ 21010590 (+) True slc3a1
XM_026936906.2 mRNA downstream 170031 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA downstream 232239 21087941 ~ 21118964 (+) False camkmt
TU59013 other upstream 226891 20574973 ~ 20575479 (+) True G49862
XR_004577568.1 other upstream 1446272 19341350 ~ 19356098 (+) False sfxn5a
trnae-cuc_10 other downstream 149748 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1165705 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1928626 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2258483 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2598726 23454428 ~ 23455549 (+) True G51562

Expression Profile