RNA id: XM_026938626.2


Basic Information

Item Value
RNA id XM_026938626.2
length 2933
RNA type mRNA
GC content 0.39
exon number 7
gene id si:dkey-103j14.5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9643809 ~ 9666593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGTGGAGAGTTCGGAAGTGGGCGGGGACTGAAGCTTTGTTTACTAATGGGGAAAGGAGCTTTACAATCGGCTGCTCACTCGTACAGCTGGAAACTTTACCAGGTGATTATTGTGTgggctgtttgtttgtttatctgctGAAACGTGatgatgaaggctgtgctggtGGTGCATGGCGGCGCGTGGGCCATACCCGACGTGTTGGCTGAGGCTTCAGTGGCTGGGGTGAAAGCTGCTGCTCAGGCAGGGAGTGTTATTCTGAAGAGAGGGGGGTCTGCACTGGATGCTGTTGAAGTGGCCGTGAGAATGATGGAGGATAATGTGGTTTTTGATGCAGGTCACGGCGCTGTGCTGAATACCGATGGAGAAGTGGAGCTGGATGCCATCATCATGGAGGGAAAAACGCTGGGCGCTGGTGCTGTTTCGTCAGTTAGAAACATTGCTAACCCCGTTAGCCTTGCCCGTGCTGTGATGGAAAAGACTGAGCACATCATGTTGACGGGCAGGGGAGCGAACCTGTTTGCAGAGAGCATCGGTGTTCCTACAGTCCCAACACAGGCTTTGGTGacggaggaggagaggaaagagtGGCAGCGCTACAAGAAGTACGCTGTTGGTGTCAAAGAGCTTTTTAACTCACAGTGTGGCCATGACACAGTTGGAGCAGTGGCTCTGGATGCATTTGGGAATGTTGCCTGTGCAACCTCAACAGGAGGAATCAGGAACAAAATGGTGGGAAGAGTTGGAGATTCTCCTTTCATCGGATCAGGTGGATATGCAGACAATACGAGTGGTGCTGTGTCCTGCACTGGGCATGGCGAGTCTATTCTGAAAGTCACCTTGGCCAGGCTAATCCTCTTTCACATGGAACAAGGAAAGTCAGCATGTGAAGCAGCTGATTGCTCTCTGCAGTACATGGCCAAGCGTGTTCAGGGGGGTGGAGGAGCCATAGTCGTGTCTCCCACCGGGGACTGGAGTGCGGCGTTCACCACAGAGCGCATGGCCTGGGCCGCCTGCAAGGGCGAACGTCTCCACTACGGTTTAAACCCCAAAGAAATGTTTGAGGAAACATTGAATTGATAACAcagttgttgtatttttttgtacatcTAAGTTTTATGTGACCATGCCATAGAAGAATGAAGAAATAAGctcaggaaaaaagaaacattttgaaCTTTCTCACTTAGGTCTGAATTAATttgatatgatttttaaaagaattttaagaATATGAGGCACTCTGTGTCACAGGACAGCATTTCTCACCCAGCGAGGTTGTAACAGAGCCATATTTCTATACACCATATCATCAACAATGCTAATTCTGAAgtggatttattattatttatatattttctattgTCAGTGAAGGACTGTTTCAGTCACATCACATCCATAACACAAGTATAAGTAGTGTGTCATATATACATTGCTCATGGTGAGGCTCGGGTAGATTTTTAACATGGAACATTATAAGACACACAGTATGGATGTGTTATTTAACCTGTATGTACGTGACTGGATTCTCTGATAAAGTCTGCCAGATGGCATCCGGAAAACCAGATTGTGTGCAGAGACGTAGCAATGTATAGACCTAAACAACAATTATTTATATCTACACATACTTCTTGTTTTCATCCAAGTGACATTGTATATTTAATACCTTTGCAAAGGTCTTTAATATCCACAAAATTACCTTAAAATTGCATTTCCCCCCAAATTTCTCTTTGTGATGTCATGTCCATAATGCTCATAAACTGCTGTATATCtgcaaaatgtaaattaatatcTTATGTTTGAAAAGTAGCCTATATGCTTTCTCTACACAGTATGAAATATCACATGAccagatataaaaataaaaccctgtCTCAATGATACTAAGCTTATTTTAGCAATGAGACACTTTGCAAGtcaatataaatttaaatgttacgTCCATGAAACTGTCATTGCTTTATATCATTATTCTTGagcaataataaatacaattatatataataaatacaataaatataattcacAGGCTTTTAATTTATCGCTGTACAATATTACTGTATTGTACTTTTACTTACCTATTTGCTATTTCTCTCTTCAGGAACCAGGATTCATTGATTTAATTTTAGAAAATCTACTAGCACAATATAGGCATCCTAAATTACATAGTGGTTATAACTTCTGTGTTCTAAAATCATTATCCCATTACagtatattcatatttcatagtGCTTTTCTTGGACCAGTCCAGCTCTTCTTGTTAATCACACTATCACATTACATGATTTACTACTCCATTTGCATTTGAATATGATTTAGATATAGTTTCAAACTCGCTTTACTTCAGTCTCGTTTatattgaataaataattgaaagCACCTGTAATGATGATTCAAGATCCAATTAgtaacatcattaaaaaaaaagaatggctTATAATGAAATCTGACACCAAGGGTCTTCTTCAATAGCTCCCATTTAATAGGCTTATCTTATTGAACTTCAGTGTAAAAGGAAATCAAAGTTAGCCGAGTCATTAGCTGTACTTTTTTTGTTCCATCCCTCTTTCTTAAAAAAGAGAAACTCGTCTTTGAATAATGACTGATGAATTCAGACGCATCCCATAAGCAGAAGGATGAATAatctcttcaaaaaaaaaaaagaggtatcTCCAGAAAATAGTTTAAAGCAAtttactttcacaaaaaaagagTGGCTTTTACTTTTCTCGGACTGGGAGAGCCAGATGGTCCTGTAAAATCATATGTGCTATTTGTGTTATTTGCTTAAATGTTatccataaaatgttaaaaacgtCTACATGTTGAACATTTGCAAAGTAGTTTGAAATCATGTAATGGATAAATGGTAACTGATGAAAAATGCAGAATTTGTGTGTAATAAAGGTCTTTGCTTATTTCCCAtaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51269 lncRNA upstream 116650 9526861 ~ 9527159 (+) True G43360
TU51246 lncRNA upstream 148599 9494977 ~ 9495210 (+) True G43337
TU51239 lncRNA upstream 154850 9488759 ~ 9488959 (+) True G43330
TU51055 lncRNA upstream 296573 9345430 ~ 9347236 (+) True G43186
TU51058 lncRNA upstream 298628 9344055 ~ 9345181 (+) False G43186
TU51332 lncRNA downstream 2018 9668611 ~ 9671740 (+) True G43422
TU51561 lncRNA downstream 204953 9871546 ~ 9871819 (+) True G43615
TU51592 lncRNA downstream 392933 10059526 ~ 10077649 (+) False G43646
TU51598 lncRNA downstream 404574 10071167 ~ 10072098 (+) True G43651
TU51593 lncRNA downstream 407589 10074182 ~ 10077649 (+) True G43646
XM_026945162.2 mRNA upstream 156270 9421066 ~ 9487539 (+) True prim2
XM_026942835.2 mRNA upstream 235291 9382638 ~ 9408518 (+) True map3k21
XM_026933348.2 mRNA upstream 305193 9316791 ~ 9338616 (+) True rgs17
XM_026939024.2 mRNA upstream 432516 9165830 ~ 9211293 (+) False phactr2
XM_026944483.2 mRNA downstream 73197 9739790 ~ 9745528 (+) True kifbp
XM_034302989.1 mRNA downstream 97040 9763633 ~ 9772357 (+) True vps26a
XM_034302919.1 mRNA downstream 107339 9773932 ~ 9783035 (+) False supv3l1
XM_026939583.2 mRNA downstream 107755 9774348 ~ 9783035 (+) True supv3l1
XM_026939562.2 mRNA downstream 117913 9784506 ~ 9795574 (+) True hkdc1
trnak-cuu other upstream 1174113 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 1177497 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 1977776 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2422786 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4302059 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 885666 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 927981 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1433000 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 1924742 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2016271 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile