RNA id: XM_026938675.2


Basic Information

Item Value
RNA id XM_026938675.2
length 3384
RNA type mRNA
GC content 0.41
exon number 15
gene id pkd2l1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13359076 ~ 13366067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCTATGAAAACCACTGACTTACACAGAGCACCTCAGTAACCAGCATGCAGCACGTAAACGGCAGGGCAGAGAGTCACCTGAGCAGTCAGGTAGAGTGTGAACTAGAGAGTGTAGGGAAACGAGCGTGGGTGAACCAGGCATACTGTGGCACCCCTCCACTGGTAAGGCACTCCGTCAACACTGTCTACAACGTTCCTTCCCATTTTGGTACACCTAACCCCTACCAGGCCGAGGCCACGGTGCTAAATCAACAGGAGAAGAAGAAATCTGGATGCTGCTCTGCTTTCCTTAAAGGACTATGGGGAACGACACTGACAAAggacacaacaaaaaatcaAGAGCTCTTTCTCAAAACAACTCTCAGAGAGTTATTTATCTACATTCTTTTCCTAGTGGACATATGTTTATTGACCTATGGCATGACCAGCTCAACCACCTTCTACTACACTAAAGTTATGAGTGATTTGTTTGTGAATTCATTTGAGTCTATTGGCAGCATGGATGATTTTTGGACATATGCAGAAGGTCCATTGATGGATGGCCTTTACTGGACCACATGGTACAATGACCAGCCTCTTGACACTGGGTCACACTCCTTCATTTACTACGAGAACATGCTCCTGGGAGTCCCTCGTATGCGACAGATAAAAGTCAAAAACAATTCATGCAAGGTGCCAGCAGACTTTCGCACTGAAATCACTGACTGCTTTGATGTGTACaatgagaagaaagaagatGAGAGTGCGTTTGGACTTGTCAATGGATCAGCCTGGAAGTACCACACAGAAATTGAGATGAAAGGGTCAAATCACTGGGGTTTGCTGGCCACATACACTGGAGCAGGGTACTATCAGGACCTTGCCTTGACCAAAAACGAAAGTGTTATTATCCTGGCAGAACTCAAAGAAAACCTGTGGCTGGACCATGGAACCAGGGCTGTTTTCATTGATTTTTCCACATACAATGCCAATATCAATCTCTTCTGTGTTATAAGGTTGGTGGTTGAGTTCCCCGCCACTGGTGGAGCAATACCTTCATACCAGATCCGGACAGTTAAGCTGATTCGGTACGTTACCTCATGGGATTACTTCATCATCGGCTGTGAGATGGTCTTCTGTGTGTTCATCCTTTACTACATTGTGGAGGAGATACTGGAGGTCCGCATACACAAGTGCTCGTATTTCACCAGCATCTGGAACATTCTGGATGTGATAGTGTTACTGCTTGCTGTTGTTGCAATCATCTTCAATGTATTCCGGACTATCAAAGTAAACAAACTACTTGGAAGCTTACTACAAGACCCTAGCATCTATGCAGATTTTGAATTTCTGGCATTTTGGCAAACTCAGTACAACAACATGAATGCTGTAAACTTGTTTTTTGCTTGGATCAAGATATTCAAATACATCAGTTTCAATAAGACGATGTCACAGCTGTCCTCCACGCTGGCACGCTGTGCCACAGACATCCTGGGGTTTGCCGTCATGTTCTTCATTGTGTTTTTTGCCTATGCCCAGCTGGGCTATCTTCTGTTTGGTACTCAGGTTGAATCATTCAGCACATTCCAAAAATGCATTTTCACCCAGTTTCGGATCATCCTTGGAGACTTTGACTACGACGGCATAGACAGAGCAAACAGAATCCTGGGGCCGATATATTTTTTCACTTATGTGTTCTTTGTCTTCTTTGTGTTACTGAACATGTTTCTGGCCATCATCAATGACACGTACTCTGAGGTCAAGGAGGAGCTCGCCTCCCACGACGATGACCTCCATattacagacattttcaaaCAGACTGTGATGAAGCTGAAATTCAAAAAGGACAGGATCTCAGATGTTCAGAAGGCCTTAGATGGGTCAAAAGACTTGGAGTTTAGGGACTTCAGAGAAACACTAAAAGAAATGGGtcatgatgataatgatatCTCTGAAGCTTTCTCCAAATATGATAAGGATGGCAATCAGATTCTAGACCGTGAAGAGcaggagaaaatgaaaagagagcTGGAGGAAAAAAGGAATGCACTCAATGCAGAGCTTCGTAACCTTACGCATGGAAATAAAGCAGAAGACAACGAGGAGACAAACTCAAGCTCAGTGAATCAGCAAGAGTTTCAGATGTTGGTTAAACAAGTGGCTGAATTGGAAGGTGCTCTAGCCATCGCAATATCCAAGATTGACATGGTCATGGAAAAACTGGGATTGCAGGACACtgcaaaagcaaacaaaaaacaaagcaatgGAAAAACACCTGTCAACCAGAAATGAGCAAGAGGGGCGAACATCTGGAAGGCAATGTTATGGAAAACCCAGCGCGAGTTCCCATCTTGGTCATTGGCTGCTCAGTTGAGAAATGAAGGAATTAATTATCGGATATAGCCTGGCCCACGGTCACAGAGAACATTAACTCTACATGTCACTGAAGCAAACATGACCAAAATGCCTACAACCTTATTGGCTAGTAAACTATAAGAGACTAGGAAAACTACACCTATTATAGAAAATCTTACTCTCGCATCCAGAAATATAGGCTAGATGACCATGGTAAATATTATTCTAGAAATAAACTTGACATCTTAGCAACTGATGCATGTATTAGTACCTTTACGCAAACATTTCATCACAGGAGCAGGAAGACATCAACCTGGAGAAATCACACTCTGTTACTCACTTCAGTGTGGATGTCACagattgtgtgttttatgtccTGTATCTTTGCTGTATTGTGAAACTAGAGTGCTTGTCATTCACTTAGATAATTCTAACTAATTACTAACCTCACCACTTTGTGACAGACATGAAAGTGAGTTTAATAAATTCTGTATGGCAGCTCAAGGGTCTGTACTAGGGGTCGTGAAAGAGTTTAAATTCTAAGAGAACAAGACAGCCACTGCTGTGCCCTTGAGCAAAAGCCACAAATTTTCAGATGTCTGTCTTGACTGTAAATTTGGATAAAGGAATTTTCCCAATGAATTAAGACAAAGACCCCAATTTATATGAGATTAAAGAATTTAGGTATAGAGACAACATTAAGTCATAGATTCTGTACTCTGGCTTCACCTTTTGGCTAGAAAGTGAAAAcagatttaattaatatttaataatcatattcttgtgtgtgaagtgtgtaactTTGCTAATGCTGATGGTTAACTGGAAAAATAAGCCTATTAAAAAAGCTTTTACTGTATTACATGTAATTAACTGTAGGCATATTTGAACTTATTTATAATGTGCTGATCTTGAATTGTGAATGTAAAATTGCTTGAACCTCAAACACTTCATGCTTGATATTACATGTTAGCTGCAAACTCTCAGCAATTGAggttttttaatattaataattttctaacAGTAAAGTTATACTTGCCTCTAAAAG

Function

GO: NA

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53890 lncRNA upstream 45855 13312994 ~ 13313221 (+) True G45594
TU53888 lncRNA upstream 46996 13311677 ~ 13312080 (+) True G45592
TU53786 lncRNA upstream 263195 13095671 ~ 13095881 (+) True G45508
TU53744 lncRNA upstream 306547 13052240 ~ 13052529 (+) True G45473
TU53729 lncRNA upstream 341476 13011946 ~ 13017600 (+) True G45459
TU53962 lncRNA downstream 9732 13375799 ~ 13375999 (+) True G45640
TU54050 lncRNA downstream 155772 13521839 ~ 13599015 (+) True G45712
TU54051 lncRNA downstream 156839 13522906 ~ 13594825 (+) True G45713
XR_003404657.2 lncRNA downstream 278053 13644120 ~ 13645338 (+) True LOC113545747
XR_004577873.1 lncRNA downstream 523212 13889279 ~ 13889849 (+) True LOC117596881
XM_026943879.2 mRNA upstream 2644 13353569 ~ 13356432 (+) True atoh7
XM_026943888.2 mRNA upstream 2644 13353569 ~ 13356432 (+) False atoh7
XM_026943871.2 mRNA upstream 2644 13353569 ~ 13356432 (+) False atoh7
XM_026932830.2 mRNA upstream 12970 13339258 ~ 13346106 (+) False si:dkey-51a16.9
XM_026932821.2 mRNA upstream 12970 13339265 ~ 13346106 (+) True si:dkey-51a16.9
XM_026932061.2 mRNA downstream 10657 13376724 ~ 13383343 (+) True bag3
XM_026937959.2 mRNA downstream 19419 13385486 ~ 13404675 (+) True inpp5f
XM_026939104.2 mRNA downstream 53881 13419948 ~ 13430260 (+) True sec23ip
XM_026935703.2 mRNA downstream 131981 13498048 ~ 13501050 (+) True pcbd1
XM_026941819.2 mRNA downstream 222249 13588316 ~ 13633478 (+) True bcl11aa
TU53738 other upstream 325828 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 359114 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 422274 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 422274 12929559 ~ 12936802 (+) False spef1
trnat-ugu other upstream 691190 12667814 ~ 12667886 (+) True trnat-ugu
TU54033 other downstream 132025 13498092 ~ 13501046 (+) False pcbd1
XR_003404567.2 other downstream 847335 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 995300 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 2427361 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2704647 16070714 ~ 16073067 (+) True cxcl18a.1

Expression Profile