RNA id: XM_026938811.2


Basic Information

Item Value
RNA id XM_026938811.2
length 2732
RNA type mRNA
GC content 0.50
exon number 12
gene id npnta
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6942697 ~ 7006034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGCTTTGGGAACGCCAGCAGAGTGCACTTGGCTTTCCGCGGTATATAGAGGCATTGGACTCTCAGCACCACAGCAGTGCACTTCACACCTTCTGCATGAACTGGAAGCAGAAGCAGCACTGTGCTCTTCCCATGTCGGACCTTCTGTGAACTTCTCGAGCTCTGCCTGAATCGTGTTTATTTGCCAGGCTGCTGAAATAACGGAGCGCTGCGCAATAGCCGGAGTGTCGGGTTTGTGTGTGAACGCGCGCGGAAATGTTGCTAAAGTTGATCGTGTTGTGGATTTGCTGGATCGGAGTGAGTGCAGAGTTTGATGGAAGGTGGCCCAGGCAGATGGCCTCGTCCACTGGGCTATGCCGCTATGGCGCTCGCATCGACTGCTGCTGGGGCTGGACGCGGCGCTCCTGGGGGCACTGCCAGCCTCTCTACGCCTTAACCAACAGGGTAATCGGGATAAGGTGCCAGGCCAAAGctctgtgtcaGCACGGATGCAAGCACGGAGACTGTATCGGACCCAACAAGTGCAAGTGTCACCCTGGTTTTACGGGAAAGACCTGCAATCAAGatgCACGGACATGCAGTATGGCTAACTGCCAGTACGGCTGCGAGGTGATGAAAGGGGAAGTTCGGTGCCAGTGTCCATCTCCCGGCCTACAGCTCGCCCCAGATGGCAGGACATGCGTGGACGTGGACGAGTGCGCCACAGGCCGTGGCGTTTGCCCCCGCTTCCGCAAGTGCATCAACACGTTCGGGAGTTACATCTGTAAGTGTCATGATGGCTTCGACTTGCAGTACATCAACGGCAAATACCAGTGTATAGATGTGGATGAGTGTTCGACTGGACAGCACCAGTGTAGCGCATTCTCCACCTGCTACAACACACCGGGCTCCTTCAAGTGCAAGTGCAAGGACGGTTTCCGAGGGAGCACGGGTCACGAGTGCAAACCCATCCCCAGAGTGATCATCGAGCCTCCCGTACCTGGAAAGATCCCGCCTGGGAACAACAACAGGATTCCTGATACAGACCAGAAGAGGACCACTACCACTTCTCGACCACCAGTGACAGCCAAGAGGACCTCCCCGAGCACAACACCATCCTCGAAAACACCTTCACCACCAAAGAAAATCATCCCAACACCCAAAAAGCCAACCATCCCAACACGTAAACCCCCCATGACCTCTCTCAGACCCCCTACAGTAATTACTCAAAAGCCCCATGTCACACCTCACCGTCCCATTACCAACACCACCAAAGCCCCAGCTCCAACACCAAGGGTGCCAGTCGTACCCCCTCGCAGGACTCCTGTCCCTCCAGTTACTCCCTCAGACAACAACATCCACAAAGACAACAACGAAAAACAGAGAGGAGACGTCCACATACCTCGGAATAATGGAGATAACAACGTTCTCGGTACCGATTTAGACATTGAACTGGGTAACACTGAAGAAGAGCTGAAAGATGACCCAGAGGCTGGATTTCTGAGCTGCTCCTTTGATCAGGGTCTTTGTGACTGGATCCAGCACAAAGAGGGAGACGTGCACTGGGAGACAGTACCAGACCCTTCAGGTGGAAAGTATCTGACCATCTCGGAGGCGCCGGGTAAGCGGAGTGGCCGTGGAGCTCAGCTCATTCTTCCTCTGGCGTCTCCCTGGAGTGAGGGTAACCTGTGTCTGGCTTTCCGGCACAAGCTGGCAGGTCACCATGTGGGCATGCTGCAGGTGTTTGTGCAGAAAGGTCGACAGCACAGTCCAGCCGTATGGGGTCGCACAGGAGGCAGTGGCTGGAGGACGACACAGATCACACTGTGGGGCAATGGCCTGGAGAGTgtgattGTGAAGGGTGAAAGGCGGAGAGGCCATGCTGGCGAAATGGTGCTGGACGACATCAGTCTGAGGAGAGGTGTCTGTCAGGAAGAGCACAACCAGAGGAGACTctaacaaacagaaacacaaacagaaaacccTCTTGCTCGACGATTCacttaagaaagaaaagagggatCTGCTTTTCTGTGGACTTCCCACAAGATTATGAGTATGTCTCCTACAGCAGACAAATCCCCAATGCCTCCAGTAGCTGGATCAAATTGTGTATGGAATACAGAAATTCAATCAGACAATAGTTCCGAACAAGGAAAACATGCCAGTTTCTTTTGTAAATGTCATACACTTTTGTATGAGTTCCAATGAGACAGTAGGAAAACGGACCCAGCTGTGCCATGGCCACGTTTTGCTCTTGAGACTGCCTTTTTAAAGCCTTTTTAAACTAGCCAACGAGAGCATTGTGTGCTTAAAATCTACCCGAGAGACAACGTATTTCCATTgtattattgtaaatgtatccgtgtgtacatatatatataaatatatataaatataatatagatatatttGAAAAAGATGCTTTGCTAGTGCAGAATTACAGTACGTGAATTCTTCAACATGTGTAAGTGATGCAGGGCAATGTTTACACAACCCGATTTCAAGTGTTCTCTTGGCATTATGTATACTGTAAACTACCAGCCAGTAAAATTgttttgcattacatttttaagtGGCTGTATCAGCCATCCTGTATTGGCATATGATACGCGTGTGTACCCTTTAAATCTTACAGTAGGACATGCCGATCTTTTTGACCTGAACCCCTGCTGTCCTCACTCTTGTTTTAGACAAATGATGTCAGTATTTAAAGATTTATGCCAATAAAAGTTGTGAATGTACACTTTA

Function

GO:

id name namespace
GO:0060347 heart trabecula formation biological_process
GO:0003171 atrioventricular valve development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49606 lncRNA downstream 1239 6941240 ~ 6941458 (-) True G41938
TU49467 lncRNA downstream 145077 6794579 ~ 6797620 (-) True G41809
TU49415 lncRNA downstream 262424 6677130 ~ 6680273 (-) True G41768
TU49367 lncRNA downstream 404147 6535704 ~ 6538550 (-) True G41731
TU49177 lncRNA downstream 570831 6371655 ~ 6371866 (-) True G41563
TU49614 lncRNA upstream 6059 7012093 ~ 7012306 (-) True G41944
TU49679 lncRNA upstream 10731 7016765 ~ 7017405 (-) True G42008
XR_004577839.1 lncRNA upstream 135065 7141099 ~ 7142302 (-) True LOC117596848
TU49878 lncRNA upstream 307634 7313668 ~ 7315596 (-) True G42173
TU49892 lncRNA upstream 336433 7342467 ~ 7342681 (-) True G42179
XM_026938824.2 mRNA downstream 98206 6824909 ~ 6844491 (-) True aimp1a
XM_026938831.2 mRNA downstream 98594 6824909 ~ 6844103 (-) False aimp1a
XM_026932741.2 mRNA downstream 226434 6700324 ~ 6716263 (-) True pkd2
XM_034302018.1 mRNA downstream 226435 6700324 ~ 6716262 (-) False pkd2
XM_026932732.2 mRNA downstream 227022 6700324 ~ 6715675 (-) False pkd2
XM_034302824.1 mRNA upstream 11423 7017457 ~ 7119620 (-) True gstcd
XM_026933042.2 mRNA upstream 155440 7161474 ~ 7204699 (-) False lef1
XM_026933026.2 mRNA upstream 155440 7161474 ~ 7204699 (-) True lef1
XM_026933034.2 mRNA upstream 155440 7161474 ~ 7204151 (-) False lef1
XM_026934409.2 mRNA upstream 313065 7319099 ~ 7324522 (-) True LOC113538928
XR_004577821.1 other downstream 1123184 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 1714774 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 1714774 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 2333247 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 3908144 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577908.1 other upstream 155440 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 155440 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 1460950 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1462002 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1463037 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile