RNA id: XM_026938831.2


Basic Information

Item Value
RNA id XM_026938831.2
length 1173
RNA type mRNA
GC content 0.53
exon number 7
gene id aimp1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6824909 ~ 6844491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagctATTTGGGACCCAGGTTAAATTGCATCAGTAGGCTCATAGTAGTTAGGTCCTAAAATGAAAGCGCTCTAATAATAGAGTGACTATTCAACATTCCTGTTCAAGTGAACATCAGAGTTCTTGGCACGCTCCTTATTCAGGATGTCAGGCCACACACCCTCGCTGATGAGACTGGAGCAGAGGGCAGCCGAGGCGGATCAGATCATCGAGTACCTCAAACAGCAGGTCCAGCTACTGAAAGAAAAAGCCATGGTGCAGGCCACcatgagagaggagaagaagctGATGGTGGAGAACGCCAAGCTGAAGAAGGAGATTGAAGAACTGAAGAGGCAACTCCTcgagaaggaaagaaggagaggAGTGCCAGTGCCTATGCCCTCAGGAGACTCGAGTGTCCAGTGTGTGTCTAAGCCTTCAGCACCAGAGCCGACAGCTAAACCAGCTCCTGCAGCTCCGGCCTCCACTGTTCAAAGCCCTCCAGCCAACAGCACCGAGGCCAAGACGAAAGCTAAAGCAGAGAAGAAAGGAGAGAAGCAGGAGAAGAAAGCGCCTCCCCCTCAGGAGGACGCGAAGGTGGACGTGTCTCGTTTGGACCTGCGTGTCGGGCGGATCGTCACGGCGAAGAAGCACCCGGATGCTGATTCGCTGTACGTGGAGGAGGTGGATGTGGGTGAAGCGGCTCTGCGCACTGTGGTCAGCGGCCTCGTCAAACACGTCCCGCTAGAGCAGATGCAGAATCGCATGGCAGTGTTCCTGTGTAACCTCAGGCCAGCTAAAATGAGAGGAATTGTGTCTCAGGCCATGCTCATGTGTGCCAGCACTCCGGACAAGGTGGAGATCCTGGACCCACCCAGCGGGGCCGAGCCTGGGGAACGAGTCACTTTCCAGGGATTTCCAGGTGAGCCTGATAAGGAGCTGAACCCCAAGAAGAAAGTGTGGGAGCAGGTGCAGCCTGATTTACGCACTGATAACCAGCGTGTGGCCAACTACAAGGGGGCCGCCTTCGAGGTCGCCGGGAAAGGAGTTTGCAAATCTCAAACCATGAGCAACACTGGCATCAGATAAAAGCCTCCGAACCTTTGGAAGTTCAGGAATCTGAAGTTAATGAGAAATGAGTCTGTATTATCTGTAAGGCTTtctaaaatgacaataaagaattTGGACATCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000049 tRNA binding molecular_function
GO:0004825 methionine-tRNA ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49467 lncRNA downstream 27289 6794579 ~ 6797620 (-) True G41809
TU49415 lncRNA downstream 144636 6677130 ~ 6680273 (-) True G41768
TU49367 lncRNA downstream 286359 6535704 ~ 6538550 (-) True G41731
TU49177 lncRNA downstream 453043 6371655 ~ 6371866 (-) True G41563
TU49084 lncRNA downstream 522821 6295232 ~ 6302088 (-) True G41491
TU49606 lncRNA upstream 97137 6941240 ~ 6941458 (-) True G41938
TU49614 lncRNA upstream 167990 7012093 ~ 7012306 (-) True G41944
TU49679 lncRNA upstream 172662 7016765 ~ 7017405 (-) True G42008
XR_004577839.1 lncRNA upstream 296996 7141099 ~ 7142302 (-) True LOC117596848
TU49878 lncRNA upstream 469565 7313668 ~ 7315596 (-) True G42173
XM_026932741.2 mRNA downstream 108646 6700324 ~ 6716263 (-) True pkd2
XM_034302018.1 mRNA downstream 108647 6700324 ~ 6716262 (-) False pkd2
XM_026932732.2 mRNA downstream 109234 6700324 ~ 6715675 (-) False pkd2
XM_034302955.1 mRNA downstream 164918 6643933 ~ 6659991 (-) False LOC117596878
XM_034302954.1 mRNA downstream 164918 6643933 ~ 6659991 (-) True LOC117596878
XM_026938804.2 mRNA upstream 98594 6942697 ~ 7006034 (-) False npnta
XM_026938779.2 mRNA upstream 98594 6942697 ~ 7006034 (-) False npnta
XM_026938811.2 mRNA upstream 98594 6942697 ~ 7006034 (-) False npnta
XM_026938787.2 mRNA upstream 98594 6942697 ~ 7006034 (-) False npnta
XM_034302826.1 mRNA upstream 98594 6942697 ~ 7006034 (-) False npnta
XR_004577821.1 other downstream 1005396 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 1596986 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 1596986 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 2215459 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 3790356 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577908.1 other upstream 317371 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 317371 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 1622881 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1623933 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1624968 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile