RNA id: XM_034302800.1


Basic Information

Item Value
RNA id XM_034302800.1
length 4727
RNA type mRNA
GC content 0.50
exon number 17
gene id ndst2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10331733 ~ 10447727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGGCCTCAGGAGTCGCGAGCCAGCAGCATCACACAGCCGAATGAAGATGGCGGATTTGTGGACGATGCTGTCAACAAGACTTTGAATTAGCAGCTCTTTCAAAACTTACCCGGTGTCCAGATATTCGTTTTTGGATAGTCGGGCTTCAGAAGAAGTCACATTGACGCTGATGTTACAATGGAGATTCTTCAGCTTCTAACAAAACCTTTCAGCTGCACTGCATGCAAAGACTTGGCTAATCTCTGAAGGGTTTAGTTTTGGGGCTCTGCACTAATCTGGACTGTGCGGGGGCTGGACGTTTGTCACTGTCACCCTCCGTCCGTTCTCTCTCAGATGTCACCACGGAGACAGGAGGAGGCTACAGGGATAGGCGAGACACGAGAAACCTGGatttattgcacatttttacacaattagAGGAGAAGCTGACGGATTAAGTGACTGACCAAAGGAAGCCCCGTCCACATCAAGAAGTAAGGATTACCATTTCCTAGAATGGCCAGGCTGGGTTTCTGCAGGGGGCACTGTTCACCATCCTGCCCCTGTGGTGGTCATCCTCAGAGCAGCCATTGCTGAGAGCTGCAAAAGCGTCAGCCACACTTCTCTGTTACCAGTAATAAAGAAGGCTGTGTCACACAGAATCGTACAAGTTTGTAGCAGCATAAaggcatgagagagagagaggagagagacagctgATCCTTTGAGGAGCGGAAGAGGCAGAGGACTGTCGTAAGAAGCAAGAGCAAGAAACCCAATCGTCTTAAGTCAAGCTGTGGAGGAAGCTCACACTGTGTTGGATAAAGAGTGCACACGTGGTATATAGCAGTCTGACCGTGAAGCAAACACGTTGAGTCGTGGCGGCCAGAGACGGAGTTTACAGCAGGAGGCTAGTCATGGGCTATGGGGGCCATGGTGACTTAGCGTAAATGGCTCCTCTTTGCTCAAAGTGTGTACCAGTGTGTGCTGCTGAacccttttcttcctttctcttttccctCTATATCCCCTCTTCTTCTGTCTGTGAAGGTCTGCTTACCCCAATTGCTCCCTGGCTCCTGCTCTCCCTCTGTGGCGATGGGGCTGTGGAAGCTCCTGCGGGGCATCAGGCAACTGGAGCTCCACCGCCTCATCCTGGTGCTCATTATCTTTTGCCTGCTGTCTATGGCGCTCCTGGCTTACTATGTCAGCAACAGCCCCAAGATAAAGGAGGCACCTCCATTGCCCTTCAGTGACTGTGGTGAAGTGGTCGCAGCGGGGGATGGTCTGCAGCGGGTACCGCTCTTCCTGCCCCCATTCATTGGCCACCAGCGGACTGTCAAAGCAGTAGACAACTCTCGCACAGAACCTGTTGTGCTAGTGTTTGTAGAGAGCATCTACTCCCAGCTGGGACAGGAGATCGTGGCCATCCTAGAGTCCAGTCGCTTCCGTTACCACACAGAGATTGCCCCTAGCAAGGGCGACATGCCCACTTTGATGGAACGTGACCGGGGCCGCTACGCTCTAGTCATCTATGAGAATGTCCTTAAATATGTCAACTTGGATGCATGGAACCGAGACCTTCTTGACAAGTATTGCTCAGAGTTTGGTGTGGGTATTATTGGCTTCTTCAAAGCCAATGAGAACTCGCTGCTTAGCGCTCAACTTAAGGGCTTTCCTCTTTTCCTGCACTCTAATTTGGGCCTGCGGGACTACAGAATCAACGCTGCTGCGCCGCTGCTCTATGTCACCAAGCCCAACGAAGTGGAGCAAGGTCCGCTGCCAGGTGATGACTGGACTGTTTTCCAATCCAACCACAGTACCTATGAACCTGTGCTACTAGCCAGCACTAAGTCATCAGAGGCCCTAGCGCACCTTGGCCCCCATCGAGTCCTGCATGCCACCGTGGTGCAGGACCTGGGCCTTCATGATGGAATCCAGAGAGTTTTGTTTGGCAACAACCTCTCATTCTGGCTGCACAAGCTGATTTTTGTAGATGCTATCGCTTATCTAACTGGAAAGAGACTGTGCCTGTCTCTGGAGAGACACATACTTGTGGATGTGGACGACATCTTTGTGGGAAAGGAAGGAACGCGCATGAAGGTGACAGATGTGAAGGCTCTCCTAAACACACAAACCAAGCTACGAACACTAGTCCCAAACTTTACCTTCAACCTCGGCTTCTCTGGAAAGTTCTACCATGCAGggactgaagaggaggatgaaggtGATGACATGCTGCTACAGCACAAGGAGGAGTTCTGGTGGTTTCCTCACATGTGGAGTCACATGCAGCCGCACCTATTTCACAACGTCAGCGTGTTATCTGAGCAGATGAGGCTCAACAAACTATTTGCACAGGAGCATGGGATCCCTACAGATATGGGCTATGCCGTGTCACCACACCACTCTGGTGTTTACCCTGTACACAGCCAACTCTACGAGGCCTGGAAGAACATTTGGGGGATTCAGGTGACAAGCACGGAAGAGTATCCCCACCTGAGACCAGCCCGCCATCGCAGGGGCTTCATACACAACGGCATACAGGTGTTGCCCAGGCAGACGTGTggtctcttcacacacactatctTTTATAATGAGTACCCCGGAGGCTCTCGTGAACTGGACAAAAGCATCCGTGGAGGAGAGCTCTTCCTCACTGTTCTTCTCAACCCAATCAGCATCTTTATGACTCACCTGTCTAACTATGGAAATGACCGGCTGGGCCTATACACCTTTGAGTCTCTAGTGAAGTTTGTGCAGTGCTGGACCAACTTACGACTTCAGACTCTGCCCCCTCTGGAGCTTGCAGCAAAGTACTTCCAAATCTTTCCAGAGGAGAGGGACCCACTGTGGCAGAACCCCTGTCATGATAAGAGACATAAAGACATCTGGTCTAAAGAGAAGACTTGTGATCGGTTGCCCAAATTTCTTGTTATTGGCCCCCAGAAAACAGgAACCACAGCCTTGCACTCTTTCCTCATCCTGCACCCAGCGATCACTAGCAGCTTCCCCAGCCCTGTCACATTTGAGGAGATCCAGTTCTTCAATGGTCCCAACTACCACAATGGCATCGATTGGTACATGGACTTCTTCCCCTTCCCCTCGAATGCAAGCACAGACTTCATGTTTGAGAAAAGTGCTAACTACTTTGACACAGAGGTGGTCCCCAAGAGGGCTGCAGCATTATTGCCCAGGGCCAAGATCATCGCTGTGCTCATCAACCCAGCTGACAGAGCCTACTCCTGGTACCAGcaCCAGCGGGCTCATCAAGACCCATCTGCTATAAACTACACCTTCCATCAGGTAGTGACAGCAGGATCTTCATCCTCTAAAGAGCTCCTGGTGCTGCAGAGCCGTAGCCTCAAGCCTGGAGAGTACGCCACTCACCTGGAGCGCTGGCTACTGCACTTTCAGTCCAAACAGCTACATATAGTCGATGGAGCTATGCTGCGCTCCAATCCTGTCCTGGTGATGGAGGGCATCCAGAGGTTTCTAGGAGTCACCCCTATTTTTAACTACACCCAGGCTCTCATGTTTGATGAGAGTAAAGGGTTCTGGTGCCAGAGGATAGAGGGAAGTCGTCCTAAGTGTCTGGGGAAGAGCAAAGGCAGGAAATATCCAGAAATGGCTCCTGAGACGCGTGCTTTTCTGACGGAGTATTACCGGGAGCATAACGTGGAGCTACTACGGCTGCTGAACCGACTTGGCCTGACACCTCCCTCCTGGCTTAGAGAGGAGTTACAGAGCAGTAGCTGGAGCTGAGAGAATCCTGCTGTACCCAAACACACTCAACACATAGGAGCCTGAGGACCGACAGAGGCATACACTCAGGGCTGAGTCAAACCCTGCTACTCCTCGCAACACTAAAGGGACAACCACACTGTAGTGactgagctgcagtgtgtgatcaTGGCTACAGAGGGAATACGTGGACTGCTACAATTAGCCCGTCCCCTAGGCATGATGGTAACACATGGTATTATTGGTCCTGTTGGACTTGGAAAGATGAGGGAGAATGCTGGTAATTTTTCACTCTGTGGATGCAGCTTTGTTTTTACTAAATCCAGACCTTTCTCACCAGGAGTTGGGTACACCAAAAGTGTGGAACGCATGAATGAACTCGTGAATTATCCGTGCTCACACTAGCCTTGCTCATCTCTTCAGAGGAATGATTGTaaaacattgtacattttaaagtGCTGTATATTTTGGGTCTGATTGGGTCTGATGGGATCCTGATGGAATGAACATGATCTCAGCCATGATGTTAGTGTACAAGACAGAGCTCAGTTTAAGCAGGGCATGTAGAAAGCGCCAGTCTGCAGCCCGTCTCTTCTCCTCATACACAGACTATGCACAGTGAGGCATTTGCAACTTATGCAAGAAGTTGATGTAAGGTCTAGTGTCCCATCATAATGTTGACAAAAGTGTCTGTCTAAAGTGAATTATGAGCTCTCGGCAAATCCCcacacatattttaaacatgcacttttttttttttttgaataaaaacCCTCTATTCCAAATCTACACTATGTGACCAGGTGCAGTGTGCCTCATGCAAATGTCAAGTCTTTCCTGTTCTGTCTAAGGAGCTCTGAGtgcagagagaggagaagggCTGCATTATGAACCTGTGGTATGCCCTGCAAACATGAGTTACtgtctacttttattttttattttgtaaaaaaaaaaacttttaaaacacCCAACACTGTATCGTCTCTAATAAACTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51991 lncRNA downstream 15285 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 26651 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 66145 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 77795 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 88851 10241941 ~ 10242882 (-) True G43910
TU52133 lncRNA upstream 205987 10653714 ~ 10655844 (-) True G44103
TU52138 lncRNA upstream 225619 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 368945 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 474582 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 505778 10953505 ~ 10956492 (-) True G44271
XM_026934574.2 mRNA downstream 1512 10323316 ~ 10330221 (-) True si:dkey-174i8.1
XM_026934564.2 mRNA downstream 3506 10323317 ~ 10328227 (-) False si:dkey-174i8.1
XM_026941074.2 mRNA downstream 13539 10255625 ~ 10318194 (-) False camk2g2
XM_026936466.2 mRNA upstream 1592 10449319 ~ 10488807 (-) True zswim8
XM_026932576.2 mRNA upstream 45110 10492837 ~ 10511847 (-) True si:ch211-51a6.2
XM_026941836.2 mRNA upstream 66224 10513951 ~ 10516957 (-) False chchd1
XM_034302507.1 mRNA upstream 66224 10513951 ~ 10516909 (-) True chchd1
XM_026932621.2 mRNA upstream 109874 10557601 ~ 10562588 (-) True mtg1
TU51003 other downstream 1102849 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1477939 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1477939 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1547935 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1861304 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1260887 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1697168 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2076909 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2083716 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2184086 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile