RNA id: XM_026939038.2


Basic Information

Item Value
RNA id XM_026939038.2
length 2065
RNA type mRNA
GC content 0.48
exon number 7
gene id vsir
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29908721 ~ 29925935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagagagagagacacaaaaggAGCGCACGAGACCAGTGAGTAAACTCCGCAGCTGTGCGCATAGTCAGCGCTCCTCGCGCTGTGCCGGAAAAAAAGCGCAAAGAAAGTTTCCTTGTCAGAAACCCGACGGTTCTGGTTGACTGCTTACAATCAAAAGCAGGAGTATTGTCATTCAAGAAGTTTAAGGAAACGTACAAGGAGTGGATCTACAGTAGAGATGGAGTTGTTCTCGGCTGTGTTGCTTTGCCTTCACCTCGTCATGGCTGTTGAAGGTAACACTGAATACCACGCCCACCCGCTCAGTGTCTCAGTGCCGTACGTCTCCTACATTTGCCCGGAAGGTGCCAACGTCACAATGGTATGTGAACAGTCCGGCGCTCTGGAGCATCCAACTGACCGACTACAGCACGTCTGGCTCTTCACGCCACACATGGACCAGCGGTGTCACGATCGCCTGCAACACAGCAACTCTGTAGTGCACGGAGCTCAGGCCACGTCCTTCAGTGTCACGCTGCTGGGTGTGACACAGGCCAGCCAAGGACGCTACTGCTGCCTGGCACTGGACGTGCTGCAGGAAAGCAAGCACAAGCCAGTTGTGCAGCAGCGGGCACACAGCCACATGATGCTTACCATCACACCACGTCGCAACAACAGTCTGAAGTGCACACAGCTGCAATCACCACCTCCCCAAGGTACAGTGGCTGCAGGTCTGGCTACAGCTgcatgcattatgggtattttgTGTCTTCCTGTCTTACTGGTCCTGGTGTACCGCCAAAGACAAAGAACCCACAGCAGCCGACGTGCACACGAGCTAGTTCGCATGGACAGTGAGGCTCACGGCCACGAGAACCCTGTGTACATGGGAGGTTCTCCACAGCCAACATCTCGCACCGTGGCTCAGATTCTGACGCGCCAGACGTCTGAAACGGGACGCCACCTTCTGGCCGACCCTGGCACCCCCTTTAGCCCAAACCCACAGGGAGATGTATTTTTCCCTGCGCATGAGCCCATCCCAGAGTCACCTGACTTCCAGGGGTTTTAGGATGGAGAGACATTTCTCAGCTCCCCTGAAATGCCTTGCACTtgtctttttctccatcttctCCGCCTCCCTCCGTCGTCCCAGCTTTCTCTATGACccggaggagaaggagagaacaCCCACCTTCTccgtctacacacacacatgcacacattttccACCTGTATCAATAGCCAGGGGCCAGGAGGAGCTCATCTCACTTTGTGGTATGGGAACGCTTTTTCGCAGACAGACCGGAATGTTCCACGACGGAGGGGAATGGGGGGCAGTTTCAGAAGGAGGTGTTGCTCCGCCCACTGATAAGCAGAGCCACTGAGAGAACCCACTCTTGCACGTTCAAACTGTTTTCTtctcttgtcttgtcttttctTCTGAACATTGAGACGGAAACTGCTCTGTTCCCCGTCGGTCTCCATCTGTCTGGTGCTTTTTGTGTAGCacatgtgtatgtgatgtgcCAGTGTGTCAGAGATCACACCCCTAATgcgtatttttacttttttatgcTCATTAGGTCATACTATTATGACTGCCAGAGAAAACTCAAGAAGTTCACTTAGCTTTACGatactgaataaatatttttgggTTTATaaaggttatatatatattttatatattgtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaaccttcAGCTGGGCCTGAATCAAACTCCCAACAATAAAAAGTTATTGCGATACTGTGTGGATGGTTGGATAGATTatgaatagatagatatatgtattagtgtatgtatatattgatGTATatatggatgaatggatagatggatggatacagATACATAATAAACAGAAGTCTATTTGTCCCCATATGTGGGACAACAAGAATTTTATTCTGCAATTGTGTTTGTATATGACTATCTGTAAAACGCCTTTAAGTATCATGTTGTGTAATGCAATACaactgctgtaaaaaaaaaaaaaaagtatatatttgttctcttttt

Function

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404265.2 lncRNA upstream 37891 29865756 ~ 29870830 (+) True LOC113542139
TU64777 lncRNA upstream 160217 29745163 ~ 29748504 (+) False ablim1a
TU64762 lncRNA upstream 223722 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA upstream 223722 29684009 ~ 29684999 (+) False G54958
XR_003404270.2 lncRNA upstream 434420 29451896 ~ 29474301 (+) True LOC113542173
TU64967 lncRNA downstream 213340 30139275 ~ 30139776 (+) True G55129
TU64966 lncRNA downstream 214289 30140224 ~ 30145109 (+) True G55128
TU64971 lncRNA downstream 222166 30148101 ~ 30157041 (+) True G55132
TU64977 lncRNA downstream 237420 30163355 ~ 30164706 (+) True G55138
TU64993 lncRNA downstream 301102 30227037 ~ 30231451 (+) True G55152
XM_026939467.2 mRNA upstream 78838 29791901 ~ 29829883 (+) True smoc2
XM_026939468.2 mRNA upstream 78839 29791902 ~ 29829882 (+) False smoc2
XM_026939443.2 mRNA upstream 160216 29712344 ~ 29748505 (+) False ablim1a
XM_026939438.2 mRNA upstream 161240 29712342 ~ 29747481 (+) False ablim1a
XM_026939222.2 mRNA downstream 186371 30112306 ~ 30116143 (+) True zmp:0000000634
XM_034302625.1 mRNA downstream 196081 30122016 ~ 30139085 (+) False zbtb8os
XM_026939223.2 mRNA downstream 196627 30122562 ~ 30139085 (+) False zbtb8os
XM_026939224.2 mRNA downstream 196770 30122705 ~ 30139085 (+) True zbtb8os
XM_026939039.2 mRNA downstream 402820 30328755 ~ 30333667 (+) True syf2
XR_004577899.1 other upstream 161374 29712258 ~ 29747347 (+) False ablim1a
trnav-aac other upstream 800807 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 803205 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 1460410 28447377 ~ 28448311 (+) True G53692
XR_003404258.2 other upstream 2702351 27197909 ~ 27206370 (+) True znf451
TU64923 other downstream 11613 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 428387 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 553997 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 1859850 31785785 ~ 31796326 (+) True G56222
XR_004577804.1 other downstream 2020267 31946202 ~ 31989051 (+) False kcnh5b

Expression Profile