RNA id: XM_026939043.2


Basic Information

Item Value
RNA id XM_026939043.2
length 2622
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113541868
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33587893 ~ 33592807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGGTTACAGCAGAAGTATATAACTCTTGGAGCACACAGTCAGCTGTTAAAGAGCTCAGTGCGGTGGAGTGCTCGTGTGTTAGTTATACTCATctgctgttcattcattcatacacacacacacacacacacacacacacaacatctccAGACCTGAAGCAGGATATGAGAGTTAAAACTAGGAGGATTTCAGCACcgactctctccatctccatcttctttttcttcttgtgcTGGATGGAGTTTCCTCTTACACTGAGTTTGAGATCTCGGTACCCACTCGTGTACAGATGGCTGTGTACGGCGAGGCGGTGCTTCTGTCCTGCACGTTCCCAGTGAGCGGCTCGTGGGACGCAGGCAGCAGCGTGATCACGTGGCAGCGCCACCTAGAGGTGGTCCACAGTTTCTTCCACGGCCGAGACCAGCTGCAGTACCAGAGCCCGAGATACGCCAACCGCACCAGCCTGTTCCACCAGGAGATGAACAAGGGGAACGCATCGCTCAGGCTGGACCGTACCACTCTGGAGGATGCGGGGGAGTACACCTGCTCCATCAGCACTCAGCTGGGCAGCCAGATGAAGAGCTTCGGCCTCAAAGTAGCAGCGTTCTACACCGAGCCTCGTCTGCACATCTCCATGCTGAACGACGGCCACGTGGAGGTGCGGGTGACCTCAGAGGGCGGGTACCCCTCCCCCtcgctgcagtggctgatgggtaaCGAGAGCGACATCACCAACGTCACACACACGCAGCTGAGGCAGGACCAACACACACGTCTGTACAGCGTGAATAGTAAACTGAACCTGAGCGGCACCGTCAACTCCTCCATCACCTTCGTCATGAAGAACCCAGATCTGGGCCAGGAGATCAGGAGGAACATCGACCTCCTCTCAGaaaatgGAGGATTTGAGCAGAGCGAACGGCGAGCACTATTCATCGGACTTTCCATTGTTGGAGTTTCGTTACTAGCGCTGATCattttagtaattattattatccttcGACACCGGAAGATGAAGAAATATAACTCCCGAAATACTTCCGAGACTAATATAGAGTCATCAGCAGCTTCGACCCatcagacagaaacagagaaatctTCAACAGATGCAGCTGAGAGTATTACAGAAACTCTGTTAAAGATCCCAGAAGAGATGGTTAGATTAGAGCGATAAATGTAGTtttttattagatatttatttaatttagcttTAAATGTAAACTGTGAGTGCTCGTGTCACTCCACTGCTTTTTCCACCTGCGTGGAGTCACGGCCTCGAAACGACGTCTCCATCCTGATCACTACCTCCTGACATTCCTGCTTCTGTGCTTACAGAAACATTTGGACATTGAAGAATTTGGACATTAGTGTCTATAATGAATGTATGAACATATAAATGCCACGTCCCATCCGGGGTGTATTCTCCCGCGGGAAAGCTCCGGATCTGCTGCGACTCTGAGCAGTGTAAAgggcttactgaagatgaataaataacagCATCCTAGATATTCTGTAAAGAAAtgaattctttattttatttattttttactttaaattgtCTTCATGTTCATGTCAgtctatttttctattatttgaTTCATTCTGCATTTTCActaaattcctttttttcttgcacACTGATTACCTCACTGTGTCACATCACCAGATCATGAAGCTAAACTGTGACTCTGCCCACTGTTTAACTGGCCGCTGTTCTAGAAGTTTCTCTCTCATTTATCACTTTTACAGAATTCTTACTTCAAGACTTTAAAgtgcaaaaacaaaccaaacagctACAAGACGAGTCATGACATTATAACAATTTTAGAACcgaaaaaatgtcaaaaacaggaaacacgAGGTTTAGGTGAACTCCTGACACAGATGTTCACACAGATGTTGTGATTGGATCAGATCTCTGCGCTGCACTCGTTACTGCATTACTGATTCAGAATAAATGTTAGTGTTCAGTAATTACTGTACAATTttctataatttaatattaaattcagTCTTAAACAGTGGCAGCTACAATCTATAATATTTATGTGTTCAGAGTTTAAGAAAAATCCACAACGTTTAAGATGTAGAGCTGtgattttaaactttttgttgttatttgatAAATCACTCTTGCTGGACGAGAGGTCTGAATAAACGCATGTcgtttattattacttatataagctcttctttatttttaaagaactttACTTTTAGATTTCAAATAATGTTCAATTTTAGTGCCAGATTTTAAAGaattgattttatattattaaaaaatacatttaaattattttcagttatatataattatacagaTGTTCATTGTTgagcattttaataataatttgaaatgaCTATTGATTAAAACTTGtattttattcagaaatgaTTCTGAATGTCATGTTTGAACACTGTGGTGCTACTTTCAAACACTCAAACACCTTTTTCTGTGTTCATAGTGTGTTCTGGTGAATACGTACAGAAATGTGGAATATcagtaaattaataattaataaaattaataaagtttattgaTGGTCAATGACTTGCTGTGCAATATTATGAGTTATATTAAACTGAATTATGTTTAGAAGAATTTGAATATTGTCTATAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67542 lncRNA downstream 11046 33575286 ~ 33576847 (-) True G57356
TU67540 lncRNA downstream 15474 33571410 ~ 33572419 (-) True G57354
TU67519 lncRNA downstream 51918 33535478 ~ 33535975 (-) True G57335
TU67393 lncRNA downstream 67016 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA downstream 67016 33519626 ~ 33520877 (-) False mycla
TU67554 lncRNA upstream 64187 33656994 ~ 33660021 (-) True G57368
TU67557 lncRNA upstream 64187 33656994 ~ 33660021 (-) False G57368
TU67569 lncRNA upstream 108413 33701220 ~ 33762528 (-) True G57379
TU67568 lncRNA upstream 109698 33702505 ~ 33704326 (-) True G57378
TU67589 lncRNA upstream 135449 33728256 ~ 33737485 (-) True G57390
XM_026939489.2 mRNA downstream 17657 33562778 ~ 33570236 (-) False LOC113542143
XM_034302922.1 mRNA downstream 17699 33562778 ~ 33570194 (-) False LOC113542143
XM_034302923.1 mRNA downstream 17709 33562778 ~ 33570184 (-) False LOC113542143
XM_026939488.2 mRNA downstream 17710 33562778 ~ 33570183 (-) False LOC113542143
XM_034302921.1 mRNA downstream 17842 33562778 ~ 33570051 (-) True LOC113542143
XM_026939302.2 mRNA upstream 17650 33610457 ~ 33644218 (-) True si:dkey-157l19.2
XM_026939301.2 mRNA upstream 17650 33610457 ~ 33644217 (-) False si:dkey-157l19.2
XM_034303178.1 mRNA upstream 17650 33610457 ~ 33644168 (-) False si:dkey-157l19.2
XM_034303179.1 mRNA upstream 52951 33645758 ~ 33656870 (-) True lgmn
XM_034302769.1 mRNA upstream 71007 33663814 ~ 33692927 (-) False pcnx1
TU67534 other downstream 17675 33565536 ~ 33570218 (-) False LOC113542143
trnag-gcc_5 other downstream 57896 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67506 other downstream 125551 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 158124 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 243084 33340222 ~ 33344809 (-) False slc38a6

Expression Profile