Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026939044.2 |
| length | 1245 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | psmb1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 27342921 ~ 27347922 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02732 | PSMB1; 20S proteasome subunit beta 6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU63096 | lncRNA | upstream | 1825 | 27337047 ~ 27341096 (+) | True | G53402 |
| XR_004577892.1 | lncRNA | upstream | 69744 | 27261131 ~ 27273177 (+) | True | LOC117596902 |
| TU63030 | lncRNA | upstream | 98763 | 27242955 ~ 27244158 (+) | True | G53340 |
| TU63002 | lncRNA | upstream | 220982 | 27111544 ~ 27121939 (+) | True | G53312 |
| XR_004577887.1 | lncRNA | upstream | 274741 | 27058878 ~ 27068180 (+) | True | LOC117596898 |
| XR_004577721.1 | lncRNA | downstream | 988 | 27348910 ~ 27355673 (+) | True | LOC113541894 |
| XR_003404268.2 | lncRNA | downstream | 179943 | 27527865 ~ 27530466 (+) | False | LOC113542161 |
| XR_003404267.2 | lncRNA | downstream | 180184 | 27528106 ~ 27530466 (+) | True | LOC113542161 |
| TU63021 | lncRNA | downstream | 212250 | 27560172 ~ 27562940 (+) | True | G53331 |
| TU63329 | lncRNA | downstream | 716721 | 28064643 ~ 28067481 (+) | True | G53614 |
| XM_026939414.2 | mRNA | upstream | 15266 | 27314533 ~ 27327655 (+) | False | tnfaip3 |
| XM_026939413.2 | mRNA | upstream | 15266 | 27318008 ~ 27327655 (+) | True | tnfaip3 |
| XM_026939449.2 | mRNA | upstream | 66592 | 27274516 ~ 27276329 (+) | True | olig3 |
| XM_026939201.2 | mRNA | upstream | 85042 | 27244951 ~ 27257879 (+) | True | si:ch73-52p7.1 |
| XM_026939381.2 | mRNA | upstream | 129799 | 27207328 ~ 27213122 (+) | True | bag2 |
| XM_026939076.2 | mRNA | downstream | 12920 | 27360842 ~ 27365471 (+) | True | pno1 |
| XM_026939508.2 | mRNA | downstream | 38335 | 27386257 ~ 27393196 (+) | True | plek |
| XM_026939450.2 | mRNA | downstream | 77920 | 27425842 ~ 27435989 (+) | True | LOC113542114 |
| XM_026939324.2 | mRNA | downstream | 159313 | 27507235 ~ 27517687 (+) | True | gtpbp2a |
| XM_026939325.2 | mRNA | downstream | 159636 | 27507558 ~ 27517687 (+) | False | gtpbp2a |
| XR_003404257.2 | other | upstream | 135676 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | upstream | 136526 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | upstream | 136551 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63018 | other | upstream | 350210 | 26985978 ~ 26992711 (+) | True | G53328 |
| TU61306 | other | upstream | 3285034 | 24055241 ~ 24057887 (+) | True | LOC113540163 |
| TU63410 | other | downstream | 1099455 | 28447377 ~ 28448311 (+) | True | G53692 |
| trnav-cac | other | downstream | 1757522 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| trnav-aac | other | downstream | 1759920 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| XR_004577899.1 | other | downstream | 2364336 | 29712258 ~ 29747347 (+) | False | ablim1a |
| TU64923 | other | downstream | 2589626 | 29937548 ~ 29941181 (+) | True | G55091 |
