RNA id: XM_026939049.2


Basic Information

Item Value
RNA id XM_026939049.2
length 2546
RNA type mRNA
GC content 0.51
exon number 10
gene id btbd9
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29094690 ~ 29106547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGCGACAGTCACCCTCTGCGCCCTCTGGGCTCAGCGGCTGAGGTCGACCACATGCACCTTCTCTCCGAGCAGCTGGCAGCGTTGGTGCCCGCCGAGGAATACAGCGACGTCACGTTTCTGGTGGAGGAGAAGCGGTTTCCTGCTCACAGGGTCATTCTGGCTGCTCGCTGTCAGTACTTCAGAGCTCTGTTATATGGTGGGATGAGGGAGTCTCAGCCACAAGCCGAGGTCCGTTTGGAGGACACTCGAGCAGAAGCGTTCTCCATGCTCCTGCGCTATCTGTACACAGGCAGAGCTAACCTGAGCGAAGCCAAAGAGGAAACGCTGCTGGACTTCCTGGGCTTGGCGCACCGCTATGGTCTCCAGCCACTAGAGGCCTCCACCTGTGACTACCTGCGCACACTGCTCAACGCACAGAACGTAAGTTTGATCTTCGATGTGGCCAGTCTGTACCACCTGAGCAGCCTGGCCGAGGCATGCTGTTCTTACATGGACCGGCACGCTGTGGAGGTGCTCAAGTCCGACGGCTTTCTCGCACTCTCCAAGCCTGCCCtgctgacagtagtgcagagAGACTCGTTCgcagcgagtgagagagagatcttcCAGGCGCTGTGTCGCTGGTGCAAACAGAACAGCGAGGACCCCAGCGCACGCGAGGTGATGTCAGCAGTGCGGCTGCCCCTGATGAGCCTGTCCGAAATGCTGAACGTGGTCCGACCCTCTGGCCTCCTGAGTGCCGATGAGCTGCTCGATGCCATCCAGACACGCTCAGAGAGGAGGGACATGGAGCTCAACTACCGCGGCATGCTCAtcccaGAAGAGAACATAGCCACAATGAAGCATGGAGCCGTGGTAGTGAAAGGCGAGCTGAAGTCGGCTTTGCTGGATGGAGACACTCAGAACTACGACCTGGACCACGGCTTCACCAGACACCCGATAGAGGATGATGGACGCAGCGCAGGGATCCAGATCCGTCTGGGTCAGCCATCCATCATCAACCACATCCGCCTGCTGCTCTGGGATAAAGACAGCagATCCTACTCTTACTACATTGAAGTGTCTATGGACGAGCTGGACTGGGTGCGAGTGGTGGATCACTCCAAGTTCCTGTGTCGCTCCTGGCAGAACCTCTATTTCCAAGCCCGTGTCTGCAGGTTTATCCGTGTTGTCGGGACACATAACACAGTCAACAAGGTCTTCCATTTGGTAGCTCTGGAATGCATGTACACACAGCGTCCCTTCATCCTGGAGAATGGCCTTCTGGTCCCCAGTGAGAACGTAGCGACGGTGCAGGCGTGTGCGAGTGTGGTGGAAGGCGTGAGCCGCTGTCGAAATGCCCTGTTAAACGGAGACACAAGCCACTACGACTGGGACTCGGGATACACCTGCCACCAGCTGGGCTCCGGAGCCATCGTCATCCAGCTCGCCCAGCCTTACCTGCTCAGCTCCATGAGgttgttGTTGTGGGACTGTGATGAGCGAAGTTACAGTTACTATGTGGAGCTCTCCACTAATCAGCAGCACTGGGTCAGAGTGGTGGATCGCACTCGAGTGGCATGCAGGTCATGGCAGACGCTGCGTTTCGAGAGACAGCCAGCTTCCTTCATTCGCATTGTGGGGACACACAACACAGCTAATGAGgTGTTTCACTGTGTGCACTTTGAATGCCCGGCTCAGCTAGACACTGAGGTCAAAGAGGGCACTCCAGGCTTAGATCACCCAAACCAAGAGCACAGTACCCAGCATGCTCAGCACTCCCAGCCCCAGGGCCTGTCCACCCAGAGACCCACCACTTCATCTTTGCACACATAGGAATGTGAATCTTGCAGTGTTTGCTCAAACGTATGCGTATGACAAAACACATCAGGCGCTTATGTCATAGGTTTGTGTTCCAGCATCACGTGCTGCTAATagtatatgaaaatatatttataattaaagtcCTTAGTTATAGTAATGAGGATGATGATATTTATGAAGATATTGCTGTATATAGGCATTTAGTTTATTCTGTTCCTTCAGCTACACAATCTTTGGAGTCTTTTTATTGTGGATAGCTTCCTAGAATGTTTTCATCACTTTTAAtgagtgtcttttttttttcctggctgGATGCATGATATTAGAAGTGAAAATATCAAACCATgagtatttctttctttttttttcttttgttattattaaacatgaatggTAGACAGTGTGACACATGAGTCAAAAAGCCATGAGGGTTCCAAAGAATGTAGAAAAGACAGATCAGGGCTAGTAATGAGTCATAAAAGGAGtgtaaagaaaaaggaaaatttgGTCCTACAGTGTACGATGCAGCCGCATCGATTTACAAGCCAAGATCTGAATAGAGTCAAAAAGGAAAATGGTTAAACACCAATACTGGCATCGAAATTCTATACATATGTcccactttgtgtgtgtgtgtgtgtgtgtgtgtaaaaagagCTCAAATTTCTTTCAGAGCTTGAAGGCAATAGACAACACCCAGAATTATTTCACAGTGTTCTTATTGCCAGGGTGATGGGATT

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63419 lncRNA upstream 601001 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 613709 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 629624 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 648743 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 659770 28436980 ~ 28437837 (+) True G53629
TU64516 lncRNA downstream 11519 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 17946 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 345349 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 573979 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 577462 29684009 ~ 29684999 (+) False G54958
XM_026939137.2 mRNA upstream 4368 29084646 ~ 29093239 (+) True glo1
XM_034302906.1 mRNA upstream 24647 28522346 ~ 29072960 (+) False macrod2
XM_034302925.1 mRNA downstream 2895 29109442 ~ 29135365 (+) False zfand3
XM_034302926.1 mRNA downstream 9020 29115567 ~ 29135365 (+) True zfand3
XM_026939342.2 mRNA downstream 56868 29163415 ~ 29361109 (+) False LOC113542066
XM_026939341.2 mRNA downstream 57039 29163586 ~ 29361109 (+) False LOC113542066
XM_026939339.2 mRNA downstream 58082 29164629 ~ 29361109 (+) False LOC113542066
TU63410 other upstream 649296 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1890362 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1891212 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1891237 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 2104896 26985978 ~ 26992711 (+) True G53328
trnav-aac other downstream 1295 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 605711 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 831001 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1247775 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 1373385 30479932 ~ 30486287 (+) False LOC113542119

Expression Profile