RNA id: XM_026939053.2


Basic Information

Item Value
RNA id XM_026939053.2
length 3130
RNA type mRNA
GC content 0.44
exon number 7
gene id ikzf1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18063825 ~ 18081466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGTTAGTAAAATCCAGTAACAAGAAGAGACCCTGAGTGCAGTCTCTCTCTTGAGAGAAACTAAATGAATAACCCATGAAGGGTCCACTCTGCTCATCCCATCTCATGCATGGCTGCCAGCGCTACTCTACTGGCCGTCCTCTTTGACTGGCACGACGCAAAGCGAGGTGCCAAGGGCTTGCGGGAGCCGCTCGGCCTGTGGAAAATAAAAGCTTGCGGGAGGTTTCGGCTGATTGCAGACGCGTGAGGCATGCTGGGCTGGAAGGAGGAAGTGCAGTGGGGAGGAGGGGAGGGACCGCGCATCCCCAGCGCCGCCGCGCCGCCTCGGACTGCGCCACATGGAGCGGTGCGCGCCTGGAACAGCTTCATACTGCACCCGAGCCGAGGACTAACAGAGTACCTGCACAGGATGGAGACCGAAGAGGCACAGGAAATGTCCCAAATAGCAGGGAGGGACAGCCCCACTACTAATGAAGGGGCAGAAGAACAAGAGGAGGCCATGCCTGTCCCAGAGGACCTGTCCACCAGCACAGGTCTCCAGCACAACAATCGCACTGACAAACCAACAGGTGAAAGGCCTTTCCAGTGCAGTCAGTGTGGTGCTTCCTTCACTCAGAAGGGCAACCTCCTACGCCACATCAAACTTCACTCTGGCGAGAAACCCTTTAAGTGTCACCTATGTAACTATGCCTGCCGCAGAAGAGATGCTCTTACCGGACACCTTCGCACACATTCTGTTGGAAAGCCCCACAAGTGTGCGTACTGTGGACGCAGCTACAAGCAGCGAAGCTCGCTAGAAGAGCACAAAGAGCGATGCCACAACTACCTGCAGTGCATGGGCCTTCAGAACAGCATCTACTCAGTGAAGGAAGAGAACAGCCAGAGTGAGCAGAGGGAAGACTTAAACCTGGCTGCGTCTGAGAGAGCCTTGGTGCTAGACAGAATAGCAAACAATGTAGCTAAGCGTAAGAGCTCTATGCCACAGAAGTTTATAGGTGAGAAGCgcttctctgacctctcattTGAGAGCAGCTCGGGTGAGATGATGCAgccatcagcagtgattgaccAGGCCATCAACAGTGCCATAAGCTACCTGGGAGCTGAGGCTCTGCGGCCGCTGGTTCAGACCCCACCAGGCTCCACCAGTGATGTGGTTGTCAGCCCCATCTACAACCTTCACAAGGCCCAAACGGCTGAGAGCAACGGCTTGTCAGCTAAAGATAGTGCAGCCGAGAACTTGCTCCTGCTTTCTAAGTCCAAATCTGCAATGAGCGAGAAAGACGGCTCACCCAGTCACAGTGGCCAGGACTCCACTGACACCGAGAGCAACAACGAGGAGCGGGCAGCTGGGGGAGGAGGACCGGCGGCAAGTGGTCTCATCTATCTGACCAATCATATGGCCCCAGGAGCACGAAATGGAGCTTTGCCCCTGGTGAAGGAGGAGCAGAGGCACTATGAGTCTCTGCGGGCAGTAGGAATGGAGCTGGGCATGGCAGTGGCTACAGAGGGCTTTAAAGTGCTAAGTGCTGAGGGTGaggaagtgagggcatatcGCTGCGTCCACTGCAGGGTGCTCTTCCTGGACCATGTCATGTATACCATTCACATGGGATGCCATGGCTTCCGAGACCCCTTCGAATGCAACCTATGTGGCTACCGCAGTCAGGACCGCTACGAGTTCTCCTCACACATCACACGTGGAGAACACCGctactgagcacacacacacacacacacacacacagacacacacacacagacacagacacacagacatctTATGCATATCTTATACATatcaaatatatgtataattgttttttttatatattgtctGAACACTGTGTGCATGCTGAAAAGGtctattattaatttaatctaCACTGATTAATGTAGACAGATGTAAATATAATTCGTTGCCATGTCTATTTTTCTACAGCTGTGTGAGtaactgataaataaaagaaaatacttttaaaaacaaacagtactGAACAATGGAATTGAAATTGAGGCAAGACAGTAAATTGTTTAAGAAAAATCTCCAAATAATTTTTTCCTGGATTCACAGCATAAATTAACCCTGTTTTTGGAGCAGcattcaatttatttaaaagactAAATTATATTTGCATTCATAACCAAAAACCAAGCAGCTTTTCAGGAGAACACAAAATCCTCTGTGTTTCTCACTGGTTTggcttaataataaattgtgtaattttgttTATGAATTAGTACTCACCTATTCCActtgtatatgtaaatatacagattGTCAAAACTATTAAAATACAGTTTCAAGTGTTACATGTGAGGATAAAGATATATGGCAATAACGATTGTATCCACTACCaatcaaaagtttggacacactagTTTGAATATATAGATTTATCATTGTCTTAAATACTGTTTGATACAGCTattgaaatttgtttctaagacaaacataaataatgacattaatgacCATGtacaatgtatgtgtgtatttttaataggtcatttataattaatacaaGTAGCTGTTACTTAAATTTTAATTGTGTCCAccaacaaatatttttcatttagaacTTAGGAGAAGCATTCGACACAACCTCGGCCTATGTGAGACCTGTAAGAGAAGCCTCCTGGTGTCATGAAGCTGGCTGTGAAGATTTCAAGAAtgtgcaaagcttcatcaggaGCACTATTAAGAAGCTGAAATCTAAAagagttttgatttttttatttgtttagcactTTTCTTGGTCATTGAATAATTCCATATGTGTAATATCCCAGtgttaatgttttcattattattctaaaatagcagaaaacagtaaaaagaagaaaaccaTTCTACGAGCTTGTGTGTCCAAACGTTTGACTGGGAGTGTACTTCTTATATCAGCAGTATTGAGAACTTGACACTGCTCAAACAGAGAACTATACTCCCCTCCCTGTATGTATTATGAGCAAGTTTTTTGGTCcgttgtatttcttttttttttatcttcatattttgtttttagtattatttaacCTTAGATATCCACAGGATTGGGCACATACATATATTAGCATCAGCAATGCTAAAACATGCTTGcaaaatatcaataaaaaaattaccttCA

Function

GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57280 lncRNA downstream 16939 18037687 ~ 18046886 (-) True G48411
TU57216 lncRNA downstream 76194 17987422 ~ 17987631 (-) True G48368
TU57104 lncRNA downstream 245221 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 261939 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 298160 17762794 ~ 17765665 (-) True G48254
TU57290 lncRNA upstream 2191 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 6038 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 85554 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA upstream 88559 18170025 ~ 18173182 (-) True G48476
TU57866 lncRNA upstream 762287 18843753 ~ 18844635 (-) True G48938
XM_034303123.1 mRNA downstream 8928 18047425 ~ 18054897 (-) False ttl
XM_026944510.2 mRNA downstream 8928 18047425 ~ 18054897 (-) True ttl
XM_026944048.2 mRNA downstream 53232 18001657 ~ 18010593 (-) False bag5
XM_026944039.2 mRNA downstream 53962 18001657 ~ 18009863 (-) True bag5
XM_026940722.2 mRNA downstream 94271 17965747 ~ 17969554 (-) False ckba
XM_026934615.2 mRNA upstream 26556 18108022 ~ 18122718 (-) True vwc2
XM_034303057.1 mRNA upstream 46883 18128349 ~ 18158184 (-) False zgc:110045
XM_034303056.1 mRNA upstream 46883 18128349 ~ 18158184 (-) True zgc:110045
XM_026941473.2 mRNA upstream 46883 18128349 ~ 18138930 (-) False zgc:110045
XM_034303058.1 mRNA upstream 48888 18130354 ~ 18158184 (-) False zgc:110045
TU56951 other downstream 402441 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 489403 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 489403 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 587764 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 1081096 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 248902 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1235021 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1554372 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2276468 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2276522 20357988 ~ 20369097 (-) False gng2

Expression Profile