RNA id: XM_026939066.2


Basic Information

Item Value
RNA id XM_026939066.2
length 5553
RNA type mRNA
GC content 0.42
exon number 7
gene id plpp4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26529006 ~ 26620986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAAACGCTCCTGTTGCTGCTTGTACCTGAGAAAACaactgacaaaaaaacaaacaaacaaacaaacaaacctgtgAGTAATTTTCAACGTATTGTTTTGGAAGTACCGTGGTGTCCAGGTGTGGGCAGATAAATCGCTTATCAGTGTGTGGGAAGAGGTTTTAGTGGAGCAGAAACACGCACTCGAGCGCGCGACAGCGTTTCCAGTCCACTTTACTGCCATGCTGCATCACCTGGATATGcttttcagctttcttttcatcccatgaccttttttttttaatatatatgaaTTGAAATTCAGTTAGTTCATGGACAACATCACTGGAACGCATTATGGATTAAAGACGGACACCTAACGAGCACCAAGGACCaactattattataaatatttatagcctagatatacatatatataaaaatatctttttttttgcatccaaaCGCGCTGCATCCTCACTTCCATCAGCATCTTATTGGCGATGCTCAAGCGGTAAAGGACGACACAGGAGCGCAGATGACTTTCACGCAATTTCTGGAtgacatttgcatttgcaaatagaacgagaagagaagagaagagcagagaaaagaaagagaaagcaagaagaTCATGAAGATGTCTCCTCCAGACCGAAGGAAAAGCATGCGCGAGCTGGCGCTGGAGATCGGAATCCGAGTGCTGCTCTTCGGAGTTTTcgtgTTCACTGAGTTCCTGGAGCCATTTGAAAGAGTTATTCAGCCTGAAGAGCTGTGGCTCTACAAGAACCCTCTGGTGGAATCAGATCTCATCCCCAAGAGAGTCATGTTTGCTATATCGTTCCTGACCCCCCTGGCTGTAATCTTTGTGGTGAAGATCATACGACGAACAGATAAGACCGAAATCAAAGAGGCATGTTTGGCTGTGTCTCTCGCACTAGCACTGAACGGCGTCTTCACAAACACCATTAAGTTGATAGTTGGCAGGCCAAGACCAGATTACTTTTACCGCTGCTTCCCAGACGGCCAGGTGAATGCGAAAATGCTGTGCACAGGAGAACCAGGCCTGGTGTCTGAGGGCCGAAAGAGTTTTCCCAGCAGCCACTCATCCTTTGCTTTCTCTGGCCTGGGCTTCACCTCCTTCTACTTAGCAGGGAAGCTGCATTGTTTCACAGAGAGTGGGCGTGGACGCAGCTGGCGCCTCTGTGCCATGATCCTGCCCCTCTACAGCGCAATGATGATCGCTCTGTCCCGCACCTGTGACTACAAACATCACTGGCAAGACGCCTTTGTCGGTGGTGTGATCGGCCTGCTGTTTGCCTACATCTGCTACCGGCAGCACTACCCACCTTTTCTCCACACAGACTGCCACCTGCCTTATGCCAGCCTGGCACTGAGCACCACCCGACATGCGCCAGTCTCCCAGGAGGTGCCTCAGGCTACGGACAATGCCACGAGCCTGCCTCTGGAGGGCATCACCGAGGGGCCTCTATGACTAATGGAGCCCCCCTCCTTCACCGCCCGCTTGGTATGACCCACACAGACTGGCTGACTCTTGTACATTCCAGTGGGTCGTCCAGTTCCTGTTCATTTTATCCTTCACTGGTACTCTTTCTTTTTCCGTCTTGTGTTTAATACTGATTTACTAGCCTCATTTGGGATACATTTACACTCACTACACTTGTTGATGGCGAGTGTAGACCATTTCTGTGTAGCAGGAACGAGAGAAtaataaagagagaggaagactcGTTGAAGTGGCCTGTATAAATTGAGATGATTAATGATAGCACAAAACGAAGGCAAAGTCCAGCATGTTGTATTTTACTATTACAGATATGGAAATGTTCagtgtataatatgtataataatgtgaGGTGATTGGAGGGAAGGCATTGTAATAGAAGTCACAATCTGTCTATTTTGAtgtttcttttatcttttctcATTACTTTTCCAGTTCTgacttatttgttttattacactgggcagaaaaaaaatgcttttcagAGATACTTGGTGAACTCGCTGGTTGTCCATGGTAACATTCAGATATATATAGATCTCCTTCTCATTTCTCTGTCCCTTCTTTTCGGTTTCAATAGTTTGACTTACTTTGACCTGAGTCCTTCAcctcttctgtttatttttcttattttctgccACATACTCCTGGCTCGACAGTCAATACTTCCCTATTTCTTTATTCTATCCCCCCCCCCAccagtctctgtctctattcCTCACAAATTATCAGTGGCAGTGGTGCCACActgactctgtctctctgcctctttcttattttctctaTCCCCTTTCTCTTGATCTCCCTTATTATCTTATTTCTTCATTCGCCCGCcaatttccttttatttgtcaTGCCAGGGTTGCATAGAAATTTGAATACAAATGACAGCTAAACACTGTATGGTTGATATCAAGTACGCagagtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgttggaGAAGGGCGGAAACCCCAATCTGAACCTGCATTAATTTCCATTATGTGAGGAGTGGCTGCCACTGTTAATCAGCACATTAGAGCAGAATGGAAAAGGAAGCTTCCAGGCTCTTACTTAGTCATGAGTGTGTTCCCTGGGCTGGCTGTGACCTGCCACAATCAAACCCCTAATGGGATTATTCATTAACATGCCACTAAGTACTTGTGTCTTAATAGGGCAGACTGTGGTGATTAAACTGAATGGAGAGctacagtattttatttcatcCCTCAAAAGCTTAAGCTGGTGTCTGACAAGTAACTACTAAATGGCACTGCATATAACGTTATACACTGTCAGTTAATGTGCTTGCTACACCATACTTCCTGGTTGTTCTTATGAGTGCTAGGAAATAAGTGTTAATACTTTTGAGAATGCAGATCATACTTAGCTGGTCATCTATTTCTGTCTCACTAAGAGGAAAATAAAGCAACCCCGTGAACATGGACGAATATAACAAAGTAGGAAAAGTTGTCTGTTAAAACAGACATGCGGCAGCTTATTTTTCCCCCAAGCGTCTggtggttactgtaaaaccaTCAGTTTCTGACTTGACTGCGCTGTTGGAACGCGTCTGAGTTGACTGTTGCAGGAGAGCATACAGTGTTTTAAGcactttataattaatattaccATTAAACTGATTTGCAAAGTGTCAGATTTGACTTTTTGTGTAGGCATATTTAATCTATTTTGCTGTCAAAAGGTTCAtcccttttttcacttttggatgAAAAGTGATGTTTTTGACAATATTAAGCCAAAATCTTTTCGGTGCAtccttaataaatatagttaactgatgttaactcaATACTTGTCTTGGGTTAGATAAGTCGAACATACATCgaaagattttatttcacattacagAACTCAGAACAGACTCTGTTTACCTTGATAGAAAGCAAGGCCACATCTTTCAAGCGAGAAAACCGAGACGAGCCGAAAGCACCGGCCGAAAGATTACTTATGCGAGATGGAgatgattaattaataatgattgTTAATCACTGCGGATTCATATGTCGAGTGGCTCTGCTGTCATtattgaggagaaaaaaagaaaatgacatgaaaatacacaaacataacaAACATTCAAAACGTTTTTGAATACGttttacagcattacagcatAGAGCTATGTTACTTTCAATAGAGTGTAAGCTTTTGAAACATTACCTATATAGCTGTTTTAGGCTGTTAGAGAGTTAGCCTCATGCAACTGctctatttatttctcttttacaaATGGGAATATGCAAACAAAGGACTATGGCTATGCACCACAAGTTTCTTAACATATAGCTCTGTTCTCTGACAGGCGTCTGTGGGTGTTTTAAAGGAATTTAATTACCTTTGCTgtcacattttaaaagacaaaaggGTTTGTGCAATTTACGGGCTAAAACTGTGCAATATCATTGCCAGtgaccagaaaaaaaagcaaaacaaaacacatagactggtgagagaaagaaataagtgGTGAAGGAGCACTGCTGCATTTGGAAGACAAACAGAGTGAACTATAAGTGACAGTTCTATACTTTGATTCAACTTTATCTACACCTGTTCTAAAACAGTGCTTATCTCTCCACTGTTTCTTTCATGGACCTTTTACAGTACCTGATCttgtgaattaataaaaaacgGAGTGGATAAAGTTGTATTGTAAGCTGCAAATGAAAGATTCCACTCCTTGGCCTAACTATTTGTAACTTTTCATACAAGTTGGCTTGTGCAAAGTCGTATGAATTGTTGAAGTGAACAATATCCATGACTGGACTATTCCCATAAGAAAAATCCCCACTGTGTCACTGACTGTGTGATTGCTAAAAGCGAACCCTTAAGCAAATGTCTGCTGGCAAGTACAGACCTCAGGCCTGTTTGAACATGACTTCTGATTACATCATCCGAAGACTTGCTATTGCAATCCTCAGCCGAGCTACATGCAGGCGGCTGAAGTCTTTGTCAGAGGCATTGCTTGTTCAAGAACTTCCTCTGATCTGTTGTCTTGATGTTTTGTTACACACGTTACACATTTTACAGAGGGATTTATTGCCCTCAGGACACTACATCGTGACAATTTGGATATAATTCAGAGCCTGTAATTCTGATTAGAATTAATTATGTATAAAAGAATATATAtctggggtccctggaggacaaCTGGtcaggccacagcgctctcactgctgcagcccaGGTTCAATTCCAACCTCAACCACTGgagttgcatgcaacagtgtgctctcagtgccagtccaaGCCCAGAtacaactggggagggttgcatcaggcatgcagcataaaaactgtgccgaatcaaatacacggaccaatgatccattgtggtgacccctaacgggatcAATGGATCAACAACAATGGAATATATATTTGGAATATAATGGAACGTTAACACTTAATTTAACAGTTTGTTACATTAAATACAAGGTGCAGATCTGCCAACCTTGAAGAGGAATGATGCATAGACATTTTCCAATATAGCCCTTTAACTATTCACTATTCTACAATAgaaacgagtgtgtgtgtgtgtgtatatatatatatatatacatatatgtgccTGTAAACATTTCTAGTCTCTACAGCATTCCTAAAACAGGCAAGCAgcagcttttttcccctaagCAATAGGTGGTTACTGTGAAACCCTGTATATACACGCTCTCACGTTTCTACTACGATGGACCTGAGTGCACTGCTGGAACACATCTGTGCTGACCCTGCAGGAGAGCAGAGAGCTTTCTAATGATCATTCCCGTTACAATGATTTGTAaggtgttagatttgacacttagTTGTActcctatttaatctttttttggtcaaaatttTGTGCCACTTTCAAGTCATTTTGGCCACATTTTTTTGGTTCATCCCCTGATAAAtttagttaactgatgttaactttaaacacacactatatggccaaaagtttgtggacactggACCATCAtgcccatatgtgggccttcgccaaactgttgccacaaagttagaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18693 DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62841 lncRNA downstream 666 26527269 ~ 26528340 (-) True G53175
XR_003404245.1 lncRNA downstream 22762 26505767 ~ 26506244 (-) True LOC113542010
TU62725 lncRNA downstream 163648 26365138 ~ 26365358 (-) True G53065
TU62711 lncRNA downstream 173210 26286924 ~ 26355796 (-) True G53051
TU62704 lncRNA downstream 240073 26253345 ~ 26288933 (-) True G53046
TU62877 lncRNA upstream 47627 26668613 ~ 26668821 (-) True G53210
TU62871 lncRNA upstream 86716 26707702 ~ 26708397 (-) True G53204
TU62883 lncRNA upstream 99090 26720076 ~ 26720660 (-) True G53216
XR_003404260.2 lncRNA upstream 117557 26738543 ~ 26741519 (-) True LOC113542110
TU62919 lncRNA upstream 177693 26798679 ~ 26799518 (-) False G53250
XM_026939275.2 mRNA downstream 61625 26366178 ~ 26467381 (-) True wdr11
XM_034302699.1 mRNA downstream 177855 26350129 ~ 26351151 (-) True LOC117596837
XM_034302953.1 mRNA downstream 418597 26076592 ~ 26110409 (-) True tmem63ba
XM_026939067.2 mRNA downstream 455252 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA downstream 457017 26066974 ~ 26071989 (-) False LOC113541884
XM_026939462.1 mRNA upstream 8264 26629250 ~ 26629878 (-) True lhb
XM_026939344.2 mRNA upstream 18563 26639549 ~ 26667669 (-) True arfgef3
XM_026939345.2 mRNA upstream 19942 26640928 ~ 26668018 (-) False arfgef3
XM_026939221.2 mRNA upstream 66139 26687125 ~ 26706755 (-) True elovl5
XM_026939535.2 mRNA upstream 87533 26708519 ~ 26719590 (-) True gclc
XR_003404274.1 other downstream 618887 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1793119 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1877159 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1877159 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2488906 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 916790 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1812234 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2580946 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3058425 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3490845 30111831 ~ 30122655 (-) True G55209

Expression Profile