Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034301629.1 |
| length | 1286 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | LOC113541884 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 26066974 ~ 26073754 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0030001 | metal ion transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0046873 | metal ion transmembrane transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU62392 | lncRNA | downstream | 145910 | 25889508 ~ 25921064 (-) | True | G52775 |
| TU62409 | lncRNA | downstream | 150023 | 25915462 ~ 25916951 (-) | True | G52792 |
| TU62388 | lncRNA | downstream | 200887 | 25865886 ~ 25866087 (-) | True | G52771 |
| TU62373 | lncRNA | downstream | 220082 | 25843285 ~ 25846892 (-) | True | G52759 |
| TU62375 | lncRNA | downstream | 220861 | 25843012 ~ 25846113 (-) | False | G52759 |
| TU62635 | lncRNA | upstream | 44899 | 26116888 ~ 26117206 (-) | True | G52981 |
| TU62707 | lncRNA | upstream | 178366 | 26250355 ~ 26286280 (-) | True | G53047 |
| TU62704 | lncRNA | upstream | 181356 | 26253345 ~ 26288933 (-) | True | G53046 |
| TU62709 | lncRNA | upstream | 186441 | 26258430 ~ 26262823 (-) | True | G53049 |
| TU62708 | lncRNA | upstream | 201927 | 26273916 ~ 26276092 (-) | True | G53048 |
| XM_026939523.2 | mRNA | downstream | 55194 | 26003139 ~ 26011780 (-) | True | LOC113542170 |
| XM_026939525.2 | mRNA | downstream | 60880 | 26001430 ~ 26006094 (-) | False | LOC113542170 |
| XM_026939524.2 | mRNA | downstream | 62665 | 26001430 ~ 26004309 (-) | False | LOC113542170 |
| XM_034302838.1 | mRNA | downstream | 100000 | 25923030 ~ 25966974 (-) | False | anapc1 |
| XM_034302953.1 | mRNA | upstream | 4603 | 26076592 ~ 26110409 (-) | True | tmem63ba |
| XM_034302699.1 | mRNA | upstream | 278140 | 26350129 ~ 26351151 (-) | True | LOC117596837 |
| XM_026939275.2 | mRNA | upstream | 294189 | 26366178 ~ 26467381 (-) | True | wdr11 |
| XM_026939066.2 | mRNA | upstream | 457017 | 26529006 ~ 26620986 (-) | True | plpp4 |
| XM_026939462.1 | mRNA | upstream | 557261 | 26629250 ~ 26629878 (-) | True | lhb |
| XR_003404274.1 | other | downstream | 156855 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
| XR_004577835.1 | other | downstream | 1331087 | 24682246 ~ 24735887 (-) | False | herc4 |
| XR_003404244.2 | other | downstream | 1415127 | 24453119 ~ 24651847 (-) | False | lyst |
| XR_004577838.1 | other | downstream | 1415127 | 24471703 ~ 24651847 (-) | False | lyst |
| XR_004577819.1 | other | downstream | 2026874 | 24017264 ~ 24040100 (-) | False | mlh1 |
| TU63465 | other | upstream | 1465787 | 27537776 ~ 27541299 (-) | False | zgc:163080 |
| TU64047 | other | upstream | 2361231 | 28433220 ~ 28435411 (-) | True | G54269 |
| trnae-cuc_11 | other | upstream | 3129943 | 29201932 ~ 29202003 (-) | True | trnae-cuc_11 |
| LOC113541988 | other | upstream | 3607422 | 29679411 ~ 29681726 (-) | True | LOC113541988 |
| TU65059 | other | upstream | 4039842 | 30111831 ~ 30122655 (-) | True | G55209 |
