RNA id: XM_026939068.2


Basic Information

Item Value
RNA id XM_026939068.2
length 3336
RNA type mRNA
GC content 0.43
exon number 4
gene id klhl31
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26720819 ~ 26725438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTGACCACCTGACCACATCTACAgcgtgtctgtctctctctctccctcacacacactctctttccctctctctctcttacgctctctcactctccctgtctctcctctcctgcACACCAACGTGGAGCTGTGAGTCCTTCCAACACCGGCACCTACTTCATCTCAGCATAGgTCTGGGCTGTGACCCCCTGCTACAGTCATGGCACCCAAAAAGAACAAGGCCGCTAAGAAGAATAAAGCAGACATCAATGAGATGACGATCATGGTGGAAGACAGCCCAGTGAATAAAATCAATGGGCTGAACACTCTTCTGGAAGGTGGGAATGGTTTTAGCTGCATCTCAACAGAGGTCAACGACCCTGTCTATGCCCCTAACCTCCTGGAAGGCCTTAGCAACATGAGACAAGACAGCTTCCTGTGTGATCTCACAATAGCAACCAAGTCCAAGTCCTTCAATGTGCACAAAGTTGTGATGGCATCTTGTAGTGAGCACATCCATAACATTCTCAAGAAGGATCCATCCCTTCAAAAAATTGACCTCAATGAGCTGTCCCCGGTTGGTTTGGCCACAGCCATCACATATGCCTACTCTGGAAAACTGACCTTGTCACTCTACACCATTGGCAGCACGATTTCAGCAGCCATGCTGTTGCAGATTCACACCCTGGTTAAGATGTGCAGTGACTTCCTAATGCAGGAGATCAGCGTTGAAAACTGTATGTATGTGGTCAACATTGCAGATACATACAACCTGAAAGAAACCAAAGAGGCAGCGCAGAAGTTCATGCGTGAGAATTTCATTGAGTTCTCAGAGATGGAACAATTCCTGAAGCTCACCTATGAGCAGATCAGCGACTTCTTAACAGATGACTCCTTGCAGCTGCCGTCTGAGCTCACAGCCTTTCAGATTGCCATCAAATGGTTGGACTTTGATGAGAAGAGACTGAAGTATGCGCCAGACCTGTTGACGCACATCCGCTTTGGCACCATCACACCTCAGGATCTGGTCAGCCACGTGCAGACTGTTCCCAGGATGATGCAAGATCCAGAGTGTCACCGTCTTCTGGTGGACGCCATGAATTACCATCTGCTGCCATACCAACAAAACATCCTGCAGTCCAGAAGAACCAAGGTCCGTGGTGGCCAAAAAGTACTGCTTACTGTGGGTGGACGACCTGCCTTGACGGAAAAGTCCCTCAGCAAGGACATTCTCTATAGGGATGAGGACAACATTTGGAACAGGCTGACTGAGATGCCTGCAAAGAGCTTCAATCAGTGTGTGGCTGTCCTGGATGGCTTCCTCTACGTGGCTGGTGGTGAAGACCAGAATGATGCTAGGAACCAAGCAAAGCATGCCGTCAGCAATTTCTGCAGATATGACCCCCGATTCAACTCATGGATCCATCTCACCAGCATGATTCAAAAGCGTACACATTTCAGCCTCAACACCTTTAATGGTCTCCTTTTTGCTGTTGGTGGACGTAACTCAGATGGCTGCCAGGCTTCCGTCGAGTGTTATGTTCCATCCTCTAACCAGTGGCAGATGAAAGCCCCTATGGAGGTACCAAGATGCTGTCATGCTAGCACAGTCATTGATGGCAAGATCTTGGTAACTGGAGGTTACATCAACAATGCCTACTCCAGGGCTGTGTGTTCTTATGATCCATCAACAGATAGTTGGCAGGATAAAAACAGCCTGAGCACGCCAAGAGGCTGGCATTGTTCCACCACTGTTGGCGATCGGGCTTATGTTCTTGGTGGTAGCCAGCTTGGAGGGCGCGGAGAGAGAGTCGATGTCTTGCCAGTTGAATGTTTCAACCCTCATTCAGGCCAGTGGAGCTATGTTGCTCCCTTGCACACAGGAGTGAGCACAGCAGGTGTGGCCACACTGAATAGTAAGATTTACCTCCTGGGAGGATGGAACGAGGTGGAGAAGAAGTACAAGAAATGCATTCAGGTATACAACCCCGACCTTAATGAATGGACTGAGGATGACGAGCTGCccgaggctacagtgggcatcTCATGCTGTGTTATTAGCATCCCCACCCGTAAAACACGAGAGTCCAGGGCCAGCTCAGTATCATCTGCTCCAGTCAGTATATAGGTGACAGGATAGAATAGGGGAATATAGCTAGCTTGATAATGCATAATATATTTTAAGCTTTTCCTCTCAACTGTGAAATACTTTTCACACTCAGGCCAACCCTACACatttatgataaaaataaaacacatttttataaatcaaaaattaagcaaaaataactttttctaaaacattatcatttcGGTTTCatattctcttttcattttactAAGCAAGCACATATTAAACCAGTTCCATTTATTATATAAACTCAATGAACCATATTTTATGCAATTATTACTTTTCAGTTTGGATCAAATCTGGAATTAATGTTCAATGTGCTGAATTTTTAGATGAATTTGCAAGTATTAAAATGGCTCATAGGTTATAAGAACACTGATAAGAACACTGATATACGATTAGGTTTTCTTTTGGAGATtgacttttttgtgttttacaaACAGTGGAAagaattttctaaataaaaatatttaggcGTAATTCACTTAAtagttgtattttaaaaatggggCCAAGGCTTATAATTATTTCATCAGCCCTTCTCAATAGCTTTTGAGACATTGATGCAGTTGGCGGTACATCATGAAGTATGCGGAACATGATCTGTCACAAAAGTATGATATTTATGTACTGAGTTCCAAAGAAGCCAATAATACGCAAAAGCTATCTAGCTTACTATCTAACATCTAATTCATTCTTTATTATTGATGACTCGCTATCAAATACTGCTCTTTGTGATGCCATAAGCTAATCTTAgtttatgttaaatatgtaatgGTGGTGAAAACTGAGCATTTCACTTCTAGTCCTACCTGCCAGGTGTAGGTGTAATAGAAGCAGTTTACTTTTCCATCTGACGCTTCAATAGacaacagtaaaatataaaaaaaacacaccttcaGAAGAAGCTTTAGAAGAGTCAAGATGGAAGTTGAAAGGTTCGACAGGGATGGCAAGTTTTGTAAAATGACTACGCGGTTAATGGAATCAAAGCTACGTGCCTGAGCTGGCTACACAGGCAGTAAAGATTTCCGATTATTCCTACCAGctcatgttttaaaatattcgTAGGTTCTTGGAAACTGAACAATGTGACAACTGCACAACAACGgtattgtgtttttaaaatgtgactGATTTGAGAAGAGAAACGTTTGTATTTATGCTGATTCATTGTACATGTCCAAGTTCTGCATATTTATTAAAGGTTCCTATAAAATGTt

Function

GO: NA

KEGG:

id description
K10467 KLHL31; kelch-like protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62883 lncRNA downstream 159 26720076 ~ 26720660 (-) True G53216
TU62871 lncRNA downstream 12422 26707702 ~ 26708397 (-) True G53204
TU62877 lncRNA downstream 51998 26668613 ~ 26668821 (-) True G53210
TU62849 lncRNA downstream 173310 26547296 ~ 26547509 (-) True G53183
TU62848 lncRNA downstream 177597 26542964 ~ 26543222 (-) True G53182
XR_003404260.2 lncRNA upstream 13105 26738543 ~ 26741519 (-) True LOC113542110
TU62919 lncRNA upstream 73241 26798679 ~ 26799518 (-) False G53250
TU62918 lncRNA upstream 73290 26798728 ~ 26799608 (-) True G53250
TU63501 lncRNA upstream 142220 26867658 ~ 26867877 (-) True G53761
TU63549 lncRNA upstream 301377 27026815 ~ 27027038 (-) True G53809
XM_026939535.2 mRNA downstream 1229 26708519 ~ 26719590 (-) True gclc
XM_026939221.2 mRNA downstream 14064 26687125 ~ 26706755 (-) True elovl5
XM_026939345.2 mRNA downstream 52801 26640928 ~ 26668018 (-) False arfgef3
XM_026939344.2 mRNA downstream 53150 26639549 ~ 26667669 (-) True arfgef3
XM_026939462.1 mRNA downstream 90941 26629250 ~ 26629878 (-) True lhb
XM_026939386.2 mRNA upstream 233666 26959104 ~ 26969207 (-) True bmp5
XM_026939531.2 mRNA upstream 250287 26975725 ~ 27025885 (-) False col21a1
XM_026939530.2 mRNA upstream 250287 26975725 ~ 27025885 (-) True col21a1
XM_026939532.2 mRNA upstream 250287 26975725 ~ 27025884 (-) False col21a1
XM_026939533.2 mRNA upstream 252559 26977997 ~ 27025890 (-) False col21a1
XR_003404274.1 other downstream 810700 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1984932 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2068972 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2068972 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2680719 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 812338 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1707782 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2476494 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2953973 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3386393 30111831 ~ 30122655 (-) True G55209

Expression Profile