RNA id: XM_026939077.2


Basic Information

Item Value
RNA id XM_026939077.2
length 1634
RNA type mRNA
GC content 0.40
exon number 6
gene id ppp3r1a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27366318 ~ 27380631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCGGATGTAGTGTACGCGCTCACGCCTCTCTTCGCTTCCTTAACCTAACCCCTCCTAGTCGCTGCAGCAAAAAGCCCCAGAAACCGACAGCGTTTATCTTAACTGCCTGCTGTGGCAAAGCAAAACGAATATTTGCCTGGACAAGAAGAGATTGTTCGAGTTTATTTTCTGCAGTCATTTGTTGCTGCCCGTTTTTGAAGCGGAATTCTGTTTCCTGAGCAACAAAATGGGAAATGAAGCAAGTTATCCCCTGGAGATGTGCTCGCACTTTGATGCAGATGAGATTAAGAGGCTAGGAAAGAGATTTAAGAAACTCGACCTAGATAACTCCGGATCCCTGAGCGTAGAGGAGTTCATGTCCCTGCCCGAGCTGCAGCAGAATCCGCTGGTGCAGAGGGTTATCGATATATTTGACACAGATGGCAATGGGGAAGTGGATTTCAAAGAGTTTATAGAGGGAGTCTCGCAGTTCAGTGTTAAGGGAGATAAGGAACAGAAGCTGAGATTTGCTTTCAGGATCTATGATATGGACAAGGACGGCTACATTTCCAACGGCGAGCTGTTCCAAGTGTTGAAGATGATGGTGGGAAACAACTTGAAGGACACACAACTCCAGCAGATTGTAGATAAGACCATTATCAATGCAGACAAGGATGGCGATGGGAGAATATCCTTTGAAGAGTTCTGTGCTGTTGTTGGTGGTCTCGACATTCACAAAAAGATGGTAGTGGATGTGTGAGTCTTCGAGCATCCTGCCTGCCACCTACCACACGCGCTTTCCTTTCCATCTCTGATGATCTGCTCAAGACATCCAGCAAATGCTCTCTTTCAATGGAAGTATTTACTCTGTGAAGCTATCTTATTGCTACCACGAGCCTGGTGAAGCCAACATGTAAGTGTTTTGAACTCTGATCCTCACAATAACCTGGTGTAGCACTTTACTGACTGAAGAACAGCTAAGAGCATCTCTGTCTGGACAAGGGAAGACGGGTTGGCTggttcattttttccttttctttctttttgtaatttttttttttaattatatttattttgggtCACTTTTTTAAGCAAGTGTATATTAAACTTTCTGAGAAGGAGGAATTAATGTTAAAAGGAATGTTAACTTTTCAGTACAGAAGTAATTAGGGTATGACGTGCCAAGCAGAACACAGAATCGACAAACCAGACAGATCTTTATAAATTAGAAAAACTGGTCTGATTttgtttgagtttttctttcttttttcccaagtgaatactttttcattttgcaaTGTTTCTATTGTTCTTACATTTAATCATGTTAATCAGTACTTTTTTgtattgtgatgtttatttatgaatgttCATATTACTGGGAGTAACTTTATTCTGTGTTTAACTCAGTGACCGTCCAGTAGAAATAGATGCCAAAAAAATTACCTGTATTCGTGGTTTACCGAAACATCAGTGACTTCTTCAGGTTGGTCTTTTACAAAAAACCTTTTTGATGAAAACTATTAGTGTTTCAGTGCTCAAATTCTGAAGCATTTGAAAGATCTGTTAAATCACAGATCTCTATGACCACATCTATTAGTTTGACatctctgcaaaaaaaaaaaaaaaaagctgcagatCATTATGGCAGGT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:1900740 positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0060487 lung epithelial cell differentiation biological_process
GO:0097193 intrinsic apoptotic signaling pathway biological_process
GO:0042383 sarcolemma cellular_component
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005955 calcineurin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0019899 enzyme binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0004723 calcium-dependent protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K06268 PPP3R, CNB; serine/threonine-protein phosphatase 2B regulatory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63597 lncRNA downstream 46696 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 51967 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 112366 27226345 ~ 27253952 (-) True G53732
XR_004577888.1 lncRNA downstream 164420 27197359 ~ 27201898 (-) True LOC117596899
TU63476 lncRNA downstream 180242 27104811 ~ 27186076 (-) False dst
TU63459 lncRNA upstream 149945 27530576 ~ 27803450 (-) False G53729
TU63458 lncRNA upstream 150048 27530679 ~ 27532958 (-) True G53729
XR_004577818.1 lncRNA upstream 597813 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 611656 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 719742 28100373 ~ 28100589 (-) True G54201
XM_026939075.2 mRNA downstream 5652 27355002 ~ 27360666 (-) True wdr92
XM_026939469.2 mRNA downstream 25201 27337048 ~ 27341117 (-) True perp
XM_026939395.2 mRNA downstream 119954 27229014 ~ 27246364 (-) True ifngr1l
XM_026939380.2 mRNA downstream 143100 27213100 ~ 27223218 (-) True rab23
XM_034303094.1 mRNA downstream 170363 27067429 ~ 27195955 (-) False dst
XM_026939134.1 mRNA upstream 1673 27382304 ~ 27385511 (-) True cnrip1b
XM_026939502.2 mRNA upstream 31399 27412030 ~ 27421154 (-) True prokr1b
XM_026939479.2 mRNA upstream 56514 27437145 ~ 27473721 (-) True pcsk2
XM_026939457.2 mRNA upstream 121031 27501662 ~ 27504308 (-) True LOC113542117
XM_026939512.2 mRNA upstream 138238 27518869 ~ 27525942 (-) True polh
XR_003404274.1 other downstream 1456199 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2630431 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2714471 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2714471 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3326218 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 157145 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1052589 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1821301 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2298780 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2731200 30111831 ~ 30122655 (-) True G55209

Expression Profile