RNA id: XM_026939096.2


Basic Information

Item Value
RNA id XM_026939096.2
length 2644
RNA type mRNA
GC content 0.45
exon number 8
gene id rdh12
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32509524 ~ 32516634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTCCTTTTTTAATCAACTGCCTCGAGTCACTTTTACGTTGTAGTGAACGTTTAATATTGATTGTAGTGCAATaacggtttaaaaaaaaaactacgcTTCCCACAAACCCCCGCGCTACAATAGCTAGTGAACGTTCAGTTTATCATTTCTtcgctaactagcaagctagcgCGTAGCTTAGTTATATTATTCGCTTTAACCTGCAACTTCATTATACAACCCACGTCTTTAGCTAGCTGTTTCGTTTATTTGCTAGTTGGAGCTCCGAATACCCGGATGAGACCGCGCTATCTGATTAGCCCAGACGACGTTTTTGACTACGCGATCACCGGGGAGGGAAAACTACAACTCCCATGATGCTCTCGGCGCTCAGCGAGTGGGAGGTGAAACAGCGCGCATTACCACAGATTCATACCTGCAAGTTGTAACCGTTTGAACAGCACGGGCgctgtatttctctttttttatttccgctatcatgatgatgatgatgatgatgatggttgtgGTGGTGGGCTCCGGGGTCGTGGCGTTAATCCTGAGACTGATGTCGCCTCACATCAGgaaatATGCAgcaggtggagtgtgtgtgtccacagcaCGTCTGGACGGGAAGACAGCGCTGATTACAGGAGCGAACACAGGAATCGGAAAAGAGACGGCGCTGGACCTGGCTGCACGGGGTGCGCGGGTGATTCTGGCCTGTCGGGATGTGAAGAAAGGTGAGGAGGCGGCGGCGGAGATCCGCTCACGTGTGGGTGGTGCACAGGTGGAGGTGCGAGAACTCGACCTGGCGGATACCTACTCAATACGAGCATTTGCACAGAGATTCCTCCGAGAGGTGAGTCACCTGCACATCTTGATCAACAACGCCGGGGTGATGATGTGTCCTTACATGAAGACTGCAGACGGCTTCGAGATGCACCTGGGCGTCAATCACCTCGGTCACTTCCTGTTGACGTACCTGCTGATCGGTGTTTTGAAGCGCAGCGCGCCGTCCCGCATCGTCGTCGTTTCGTCCCTGGCACATTATTTCGGCTGGATCCGATTCCACGACCTGCACAGTCAGGGGAGCTACAACAGCGGCCTGGCCTACTGCCAGAGCAAACTGGCTAACGTGCTCTTCACCAGGGAGCTAGCGCGCAAGCTAACAGGGCTGAACGTGACGGTGAACTCGGTGCACCCAGGGACGGTGATGTCCGATTTGGTGCGTCACTCCACGGTGATGTCTCTGCTGTTCGCGTTGTTCTCTGTATTCCTGAAAACGCCGCAGGAGGGAGCGCAGACCTCCATTTACTGCGCAGTGGCTGAGGAGCTGCACTCCATCGCGGGAAAACACTTCAGTGACTGCGCTCCAGCCTCCGTCGCTCCTCAGGGCCGCTGTGATGAAACCGCTCGGAGGCTGTGGGACGTCAGCTGCGACCTCCTCGGTATCGAATGGGACTGAGATCGCTCTTCTCTCCATCGCAGACCCGTCACTCAGACGAGACATCCATTCTGTTCTACCAATTTGCCAAACGCACTTAATACCACTTTAAGCTTATTTAAGAAACGGGACCTGGGATCCCAATGTCGTTTCAGTCGTACGTCGCTGTAGGGCAAGCAAAAATTTTGAGTTTCATTTCTTTGTTAGAAATTTGAACGTTGTTTTAATTCACGCACATTTCACCTCCTCCCCACTGCAGCTACCTGGAATCGTACTGTTTTTATACAGAAGTAAATTTGTTTTTTACTACTGTTACATTCATGACAagagaatttaaatatttaaatatatatatatataatgtacggAAACACTATTATGATTGGCCACGTTTTCCTACTTTTCTTATATGAAGGGTCACATGATGACCAGTTGTGGTCTgatcacatttaaatattttgataaagatTTAAGGCATGAAAGATTTTATATGTTTGCAGTTGACTGAAAGTCTTGCAGAAATACACAGACATTCTGGTATTGCTGTAATTGTGGGGACTGGATGTTCTCAAAAGCACATTAATGTAACAAAATCACTTGCTGTTGTGCCATATGGAGAGACCTAGCTaatttggaaaaagaaaattgcTTAGGAAGATGGGAAGTTGCACTTTTTAGGTATCCAGTCACTTAGTGCTGGAAACTTTTCCTTAGGATTTTCtcatttaggggtccaagcactttgTTCTAAAACCCTGTTGTTTTGTCAGGATTCTTCTGGTCCTCCtcgttcttcttcttcttcttcttcttcttgactGGATAGACATGAGCCCAATTCGAacaatcaaatatatatattttattttgagtcACTGGCCCATCTGCAAAGATTTTGAGCTACTTTGCATAGTAGGCAAATCCTACATCTGGTAACTTTGACCTAATCCTTGCAAATTTGTTGTCAAATCTAAGAAAAGTGTAACTATCTAACTAAGGTTggaaaaaacattgaaaaattaaataataataataataaatgatatgatTGCTACAAACCTGTTCACAATGGAACTAAACTTAAACAACTGTAACTGCTTTGATTGGTTCGAAATTTATTTTGAGGCATGGTGGTCAACAGGGGGTGCTATAAAATTCAAATAACTGTTTTACCAGAGCTATCtgataaataaagttacattttggaCCCAGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11152 RDH11; retinol dehydrogenase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66735 lncRNA downstream 94064 32414909 ~ 32415460 (-) True G56672
TU66731 lncRNA downstream 109214 32399915 ~ 32400310 (-) True G56668
TU66724 lncRNA downstream 127693 32381127 ~ 32381831 (-) True G56661
TU66733 lncRNA downstream 199569 32300306 ~ 32309955 (-) True G56670
TU66757 lncRNA downstream 265234 32243923 ~ 32244290 (-) True G56693
TU66925 lncRNA upstream 128058 32644692 ~ 32647936 (-) True G56827
TU66932 lncRNA upstream 147247 32663881 ~ 32664343 (-) True G56834
TU66958 lncRNA upstream 197095 32713729 ~ 32713933 (-) True G56860
TU67281 lncRNA upstream 213250 32729884 ~ 32775597 (-) True G57126
TU67331 lncRNA upstream 282477 32799111 ~ 32800472 (-) True G57169
XM_026939177.2 mRNA downstream 26510 32478301 ~ 32483014 (-) True si:ch211-10a23.2
XM_026939393.2 mRNA downstream 120380 32386260 ~ 32389144 (-) True ndufaf1
XM_034302913.1 mRNA downstream 128487 32375964 ~ 32381037 (-) True nusap1
XM_034302917.1 mRNA downstream 141734 32366310 ~ 32367790 (-) True LOC117596868
XM_026939505.2 mRNA downstream 155024 32346755 ~ 32354500 (-) True tmem39b
XM_026939383.2 mRNA upstream 8770 32525404 ~ 32535619 (-) True arg2
XM_026939074.2 mRNA upstream 138482 32655116 ~ 32661612 (-) False slc66a3
XM_034303020.1 mRNA upstream 152872 32669506 ~ 32710211 (-) False sobpa
XM_034303017.1 mRNA upstream 152872 32669506 ~ 32710211 (-) False sobpa
XM_034303019.1 mRNA upstream 152872 32669506 ~ 32710211 (-) False sobpa
XR_004577855.1 other downstream 120380 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 120380 32374346 ~ 32389144 (-) False ndufaf1
TU66783 other downstream 155042 32350801 ~ 32354482 (-) False tmem39b
XR_004577843.1 other downstream 219917 32239601 ~ 32289607 (-) False brf1a
TU66291 other downstream 671289 31837182 ~ 31838235 (-) True G56303
TU66930 other upstream 137202 32653836 ~ 32661562 (-) True slc66a3
TU67278 other upstream 199193 32715827 ~ 32728741 (-) True G57124
TU67373 other upstream 502644 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 823588 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 907035 33423669 ~ 33429769 (-) False lrrc9

Expression Profile