RNA id: XM_034302616.1


Basic Information

Item Value
RNA id XM_034302616.1
length 2424
RNA type mRNA
GC content 0.58
exon number 13
gene id esr2b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32131447 ~ 32188847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaatccgggGAGTTAGCACACACCCGACATTTTACTTTCCATCTCATTTACTTCACAGGTCCGCCATTTTACGCTCCCTATCGCCCGCGTCTCACGTCCGCCATTTTACCTTCCATCTCACCCGCCATCTTACACCCGCCATTTTACACCCGCCGCCCAGCTGTACCATTAGCTTCCCTCCTGCTCCTCCAGCCTTCAGCTCCTCTCACAGAAATCGCAAAAGTGATGTACAGCAGCGAGGGTGTGGTCGAGCGCCAGCggtggacggagaggaggcgggtcgaATGGCAGgatgatgaaaagcacaaaaatcTCTATGGAAAGCAGAAATGCTGGAAATCGTCGGCACCTAACTAGTCCCGCACCGTTTGACACGGATCATACCTCAAATCGCTCGGAAATCTCGGGAGcTCCATGATGGTCACAGGCCCTTAAGCCAGGACCTCGTCTGAATTCTTCACCCCACGATGAGCTGCTCGTCGTCCCCGACCCTGCAGCTAGCAAAGGGCATGGATCAGGACGAGGCATCGCCTCTCTTTCCTTCCCTCTATCCTACGTCTCTAGCGGTGGACCGAGGAACTGTGTGTATCCCTTCTCCGTATGCAGATAACGGTCACGCCGAGATGTCATTTTACGGTCCATCTGTGCCCGAGAACTCAGCCATGGCACCTCCGCTCAGCCCGTCGCTCTTCTGGCCCTCGCACAGCACCCACCCCGTGCCCTCTCTCGCCCTGCACTGCCCGCCCGCGCTGCCATACAGCGAGCCACAGATACACACCGCCTGGGTCGACGCCAAGCCACACGCCGCGGGTCGAAACAGctcttttctgtctcattcGAAGCTCTTCGGGAAGGGGACGGAAGACGGCGACGAAGCTCCGAACTCCTCTTCCTCGTCGTCGGGCGCCGTGGCCAAAAGCGAACTGcacttttgtgttgtgtgtcatGACTACGCGTCAGGCTACCACTACGGCGTCTGGTCCTGCGAGGGCTGCAAGGCGTTCTTCAAGAGGAGCATTCAAGGACACAACGACTACATCTGTCCAGCCACCAACCAGTGCACGATCGACAAGAACCGCCGCAAGAGCTGCCAAGCCTGCCGTCTACGCAAGTGCTACGAAGTGGGCATGATGAAGTGCGGTGCACGGCGTGAGCGGTGTGGTTATCGAGTCTCCCGCCACCGCCGGACCGCCCAGATCAGAGACGGCTCGGCCAGGCTTGCGGGGGTCGGAGGTCAAGCCCAGAGACATCCTCACGCCCCTCTCcatctctcgctttctctcccGGACCCCAGGGTGCCAGCGGAGAGCGGGTTTTCTGGTTTGTCCCCCGAGCAGCTGGTGCACTGCATCCTAGAGGCGGAGCCGCCGCAGATCTACCTGAGGCAGCAGATGAAGAAACCGTACACGGAGAGCACCGTGATGATGTCGCTCACGCAGCTCGCCGACAAGGAGCTCGTCTTCATGATCAGCTGGGCCAAGAAGATCCCAGGTTTCGTGGAGCTGAGCCTGGCCCATCAGGTGCACCTGTTAGAGTGCTGCTGGCTGGAGGTGCTCATGCTGGGCCTGATGTGGAGGTCTATCGATCATCCTGGAAAACTCATCTTCTGTCCGGACCTCAAACTCAACAGggaggAGGGAAGCTGTGTTGAGGGGATCATGGAGATCTTTGACATGCTCCTGGCCGGTTCCTCCAGGTTCAGAGAGCTGAAGCTGCAGAAGGAGGAGTATGTCTGCCTCAAAGCGCTCATCCTGCTCAACTCtagtatgtacGTGACGTCGTCGGAGTGTGAGAAGGATCTGGAGAGCAGGGCGAAGTTGCTGCGGCTGCTGGACGCCGTGACGGACGCGCTGGTGTGGGCCATCTCACGAACGGGTTTATCCATGCAGCAGCAGTCCGCCCGCCTCGCTCACCTCCTCATGCTGCTCTCGCATATCCGACATCTCAGTAACAAAGGCATGGAGCACCTTTCCAGTATGAAGCGGAAGAACGTCGTGCTGCTGTATGACCTGCTGCTGGAGATGCTCGACGCCAACACGGCTCACAGCAGGCGCATGTCCGGCGGCGCGCGCTCCGACGCCGCCACCCGAGAGACTGCGCTGAACACGCGCGGGGTCGTGACCCCAGTGACCTCGCCAAACACACCCACGCCCCCTCAGATCCACAGTCCCGTCGCTCATCAACTCACACAGcgcTAGATATGAGCGGACTCTTTAACTGTTCCCTTTCTGTACGGGAGGATCAGGAGCGTGTGACATGAACTTAACGGATCGGATCGGATCGGATCTGCCCAAGCGCCTTCGGTTTGGAAACCCCGGAACGACCCCCGGACTTTATACGGACATTACCCCTGAGGTAACGCACGATTCCTCCACACAGGTGTCGCGGTTTCACTCAATCGATCACGACCAAGTCTCGAATC

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0042562 hormone binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66675 lncRNA downstream 58949 32070763 ~ 32072498 (-) True G56614
TU66676 lncRNA downstream 58949 32070763 ~ 32072498 (-) False G56614
TU66300 lncRNA downstream 197857 31887681 ~ 31933590 (-) False G56305
TU66738 lncRNA upstream 18645 32207489 ~ 32208007 (-) True G56675
TU66757 lncRNA upstream 55079 32243923 ~ 32244290 (-) True G56693
TU66733 lncRNA upstream 111462 32300306 ~ 32309955 (-) True G56670
TU66724 lncRNA upstream 192283 32381127 ~ 32381831 (-) True G56661
TU66731 lncRNA upstream 211071 32399915 ~ 32400310 (-) True G56668
XM_034302701.1 mRNA downstream 124797 31996509 ~ 32006650 (-) True gphb5
XM_026939454.2 mRNA downstream 443970 31678383 ~ 31687477 (-) False fndc5a
XM_034302784.1 mRNA upstream 3006 32191850 ~ 32230995 (-) True jag2a
XM_034302823.1 mRNA upstream 55789 32244633 ~ 32289607 (-) True brf1a
XM_034302946.1 mRNA upstream 126614 32315458 ~ 32331216 (-) False dcdc2b
XM_034302945.1 mRNA upstream 126614 32315458 ~ 32331216 (-) True dcdc2b
XM_034302944.1 mRNA upstream 126614 32315458 ~ 32330739 (-) False dcdc2b
TU66291 other downstream 293212 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 301963 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 530762 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 582814 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1270941 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 50757 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 161957 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 185492 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 185502 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 464992 32653836 ~ 32661562 (-) True slc66a3

Expression Profile