RNA id: XM_026939158.2


Basic Information

Item Value
RNA id XM_026939158.2
length 2446
RNA type mRNA
GC content 0.41
exon number 4
gene id ggps1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24316703 ~ 24345368 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTCTAGCGCCATGCGCCATCGGGTATGCGGACGCTGGAGTTCATAAGACGGGAAGAATACGCAGCGGTTCTGGCAGCTGGCTAGTGTCGATTTGCATTACTCACTATTATTGCAGTTTGAAGTGTAGTTTTCTGTTATGGATACACAGGGTCCAAGgtttttataattattgtgATCAAGTAATCAGTAGTTCGTGAATACAGTTAAAACATACTCTTGGCTTTGGTGAgcttgctaatgttagcttgtcTAACTGGAAAAAAATCGATAGCGGAAACAACTGGATCATAAATTCCAGCATTGCAAGATTTTACTTATTTGTGGAAGTTGCAGGGGATGGACAATCTGGAGGAAAAAGCTACTGAAAGGATTCTACTAGAACCATACAATTACCTGCTGCAGCTACCGGGGAAACAAATCCGAACTAAACTGTCCCAAGCTTTCAACCACTGGCTCAATGTACCTGAGGATAAACTTCAGGTAATCATTGAGGTAACGGAAATGCTGCACAATGCTAGTCTCTTGATCGATGACATCGAGGACAGCTCTAAGTTGCGGCGTGGTTTCCCTGTAGCTCACAGCATCTACGGTGTGCCATCCGTTATAAACTCTGCAAACTACGTCTACTTTCTGGGCCTAGAGAAAGTGCTGACGCTAGAACACCCTGAGGCTGTGCATGTGTTCACTCGCCAGCTGTTGGAGCTGCACCGTGGCCAGGGCTTGGACATCCACTGGCGTGACACGTACACTTGCCCAAGCGAAGCAGAGTACCGTGGGATGGTACTGCGCAAGACTGGTGGATTATTCGGCCTGGCGGTGGGCCTCATGCAGCTCTTCTCAGAATGGAGCTGTGACCTCAAACCCCTACTAGATACACTTGGGCTCTTGTTCCAGATACGCGATGACTATGCCAACCTCTGCTCACGTGAGTATGGTGCGAACAAGAGCTTCTGTGAAGACCTGACCGAGGGCAAATTCTCCTTTCCCACCATCCACGCCATCCATACACAGATCCATAGCACACAGGTGCAGAACATCCTACGCCAGCGCACTGAGGATGAAGACGTCAAGCGTTACTGTGTTGATTATTTGGAGAAGGTGGGCTCCTTTGCTTACACCAGGCAGAAGTTGCATGAGCTAGAAAAGGAGGCATACAGGTTGATTGCAGAATTAGGGGGGAACCCAGAGCTGGAGGGACTTATAGAGCATCTTAGCCACATTTACAAGGAATGAGAGGAAGCAGCTTCCAAAGAAGAGAGCTGGGTCACTCCTGAATTTCTCGTCCCTCTCCGAACTCCTCTctcttcatttttctcttttaccCCATGTTCATTTTGGCAAAAGTGAGATTAAATGGCTTTCAATATTGCACTTCTTTCCCCCAACTAATTCACCTATTTttataaatcagtaaatcaCCTCAGTTTTGACATGCATTAGAAGAATTTACCTATAATCATTTTCTAGTCTTACTGTCaaaatttttattgtcatttctgtTGTGACTGTGTCATACAAGGGCAACAAAGACCTAAGCAAACAACATAACAGATGAagcccaaatgtcttcagtgtatagcaaaaacaaaagaattgactttgccattccaatactttcagaggggactgtaaatgtgctgatggaGGAAAgtttacaaaacattttcctTTCAATAGAATTCTACACATGATTAGTTTAAGGTGAATTTtaccttttgtttttattcaataCACTGGCAATCCACAGTGCTGGGAACAATGTAGTAactttacaataaattaaagaagcaaataGTAATCACTCTGAGATGGAGAGTTAGTCATTTAACaaatcagaaaatcagaaaGATAAGTTGCTTGCCCAGttatctgtttctgtttatatattcCATGGCAGCTATTGGAGTTGTTCTGTGTTCAAAATCCAGTGTGTGCACAGTAAATACGCATTTATATAGTTTGCAAGATTTCACAGGTACTTCCGTGACATGCAGTTCCATGAAATCTGCTTTTGGCCCAATTTCTTGTTGGAAATATAGCTATGGTGAAAGTCCTAGAAGGTTTCATATGTACAAGTCAAAATTTAATTCTAAACAGCTTTTGgcacaaacacaaattaaatgttatCACTGAGAATTTGCTTTCCAAAAGCATCATTACTTGGTCAAATGTCACTTTAGAATGAAGCTGTATATTTTACTGGTGGTGATACTGCAAAGATTTAGAAAAATCCCTATTGTCCCTGTAATTGTTAGGATTCTTTGTATtttctatcattattattattattattattattattattatacaaacaTAGTATTTGGAACTCTATTGTTTTAGTTAggctttttcttatttatttatctatctattttatttaatttaatttaatttcctcCAATAAAGTTGTGCAGACCAAACCATAGGTCTGacagacatgaaa

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61421 lncRNA upstream 101118 24214840 ~ 24215585 (+) True G51957
TU61422 lncRNA upstream 106399 24197021 ~ 24210304 (+) True G51958
TU61411 lncRNA upstream 133923 24182581 ~ 24182780 (+) True G51947
TU61409 lncRNA upstream 148828 24160750 ~ 24167875 (+) True G51945
TU61408 lncRNA upstream 179331 24136911 ~ 24137372 (+) True G51944
TU61457 lncRNA downstream 2192 24347560 ~ 24347812 (+) True G51978
TU61444 lncRNA downstream 5435 24350803 ~ 24372472 (+) False b3galnt2
TU61440 lncRNA downstream 5927 24351295 ~ 24372472 (+) False b3galnt2
TU61441 lncRNA downstream 5927 24351295 ~ 24372472 (+) False b3galnt2
TU61456 lncRNA downstream 13292 24358660 ~ 24362069 (+) True G51977
XM_034302049.1 mRNA upstream 179856 24133623 ~ 24136847 (+) True LOC117596572
XM_026936201.2 mRNA upstream 317303 23885487 ~ 23999400 (+) False lrrfip2
XM_026939154.2 mRNA downstream 4816 24350184 ~ 24402454 (+) False b3galnt2
XM_026939153.2 mRNA downstream 4820 24350188 ~ 24402454 (+) False b3galnt2
XM_034302678.1 mRNA downstream 5974 24351342 ~ 24402454 (+) False b3galnt2
XM_034302682.1 mRNA downstream 5974 24351342 ~ 24402454 (+) False b3galnt2
XM_026939155.2 mRNA downstream 5974 24351342 ~ 24402454 (+) False b3galnt2
TU61306 other upstream 258816 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 511208 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 619409 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 861154 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 1201664 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 2640610 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 2852541 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 2852541 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 2852541 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 4102009 28447377 ~ 28448311 (+) True G53692

Expression Profile