RNA id: XM_026939162.2


Basic Information

Item Value
RNA id XM_026939162.2
length 4600
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC113541965
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25685684 ~ 25697851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACTCTTAACGGGCGCCATGTCTGAAGGAGATACTGACTGCATCGAAAATCATAACAATCTCTGTTCCACACTCCGTCTGCAGTATCGCACCAAGACAGCTGTCAGCCGACGGGACGTTAACAAACCTGCGGTATCAAAGCTGTGTTTACAGCGTAAAAACATCAGCATTGACATGAGAGAGGATAATGTCTGTTAACCGTCTCAGTGTGTTGTTGAGACGTGTAGCCGTGAGTGTTTTTTTCAGACTAGCTAATACAATCCGTCATCATCTCTCACAACAAGCCAACGTCTCCATGAGTGACTGAATGCATCTCAGTCTGGTTGCGGAGAAGGGCAAATCCGTTTCTAACCATCATGGCTTTTGTGAGCCTCTTCTCCTGTCCCCCAAACCCCGTCCttgacaaaaacatgacagactCTGAGCTGGCAGGGGATGAAAGGGAGGACGGTGAATTGGAGGATGGAGAAATCGATGATGAAGGGATTGGGattgaagaagaaaaggaaaccAAGGTGGAGCCTGAAGATttagaaaaagacaaagaaaaggaaaaagtacGGGAGAAAGATGACAAATCGCATCGGCATGCTCATAAGAGACACAGGAAAATCAAAGAGAAACGAAAGTCAAAAAGAAGGCGAAGGGACAGGCAGAAGCACCACTCCCCATCGAGTGGTTCTAGTTCTGACAGTTATAATACTGATCATGAGCATCAAGACAGACACAAGAGCAAAAAGAGCAAAAGCTCTTACCGGGACTATGATGGTCGGTTTGCACAGCGTGAACACGAACCTAGTGGAGGTCATGGAAAAGCACCAAGATCGACACAGCGCAAaaacagtgagagtgaggagaAGTATGATTATGATGAAGATCAGGATGACTTCTCTGAGGAGctttccaaatacaaacaagcCAAAGAGGTCACCACATCCAGCAAAGCAGGGTCATCTAAAGAGCACGGGACAAAGTCCAGCATGAAAGGACTGCAATTTAGTGGCCCACGAGGTCGAGGGCGTGGTGGAGGAAGTGCGGGCAGGGGGCGTGGTGTGCtaaacaagaacaagaaactGAAGGGCAAAACCTGGGGCCGTGGTCGGGGCAGAGGTGGAGAGTCAGGAGAAAGTGGAGGCGGAACAAAAGCGGAAGTGCAAGGTCAACAATGTTTCCAGAAGAAACGTCCGATCATGAGTCAAGAGTTCATCAATCAACACACGGTTGAGCACAACGGGAGAAACATCTGTAAATACTTCATTGAGGGTAGATGCATTAAAGGCGATCAATGCAAGTTTGAACATGACAATGTAGTcccagagaagaagaaagaactTTGCAAGTTCTATGTCCAGGGATACTGCACTAAAGGAGAGAACTGCATCTACATGCACAATGAATATCCCTGTAAGTTTTTCCACACTGGAGCAAAGTGCTACCAAGGAGACCACTGCAAATTCTCTCATGATCCTTTAACCGAGGTTACAAAAGAATTGTTAGACAAGattttGAATACAGATGAGGAGCATGCCAATGAGGAACAGCAGGAGCTAGAGGACCTGAGGAAGCAGGGTATAGTTCCTTTGCCTAAACCGCCTCCTGGTGTAGGGCTCTTACCAACCCCTGGCTCAGGGAGTCCACAGGATGGCAGCAAGAAGATCCCCTCTCTATTTGAAATCAAAGTCCAGCCGACTGTGGACCTGGCACAGAAGATTGCACTAAGgCCCAATTTCTACAATAGCACCTCTCCTCCACCTGGGCAGTTTCAGGGTAGTGGAGGCTCTGCTCAGGAGGACATGGAGACTGGAAACATGATGTCCCCAGGCCACGGTCATTCTATATTGCCACCTCCAGGCTCCCCTATCCCTGGTGGTCCTGCTCTTCACTTCGCAAGCCCAGGTCTTCCCCAGAGCCCCCCAGCACAAGCGCCACCTCAGGGCTTTGGCCAGGGCATTCCCATGCCACCCACAGGACTGCCAGGTCAGCCCCCAGTCTTCCATCAGAATACAAATCCTCAGATGAACCAGCAGGGGGCACCATTCCAGTCTTTGGCTGGCGGACAGATGAATGCACCCTTTCAAGCTATGAGTCAGATGCCCTCAGAGTTTTTCAAAAGCTTGTTCAGTGTCCAGCCACTTGGCTTAACAGAAGAAGGCCAGTCAGGGTCCATGCAGGACCCCCAGCAGCACCAGGGAGGCAGTGCTGAGTCCCACAGTGGCATGCAGGACATCTTGCCAGCTGTCCAGAAAGCTCTACTTCTACACCTGAATCAAAATCAGCAGGATCCTGACTCCCACAGAACTGAGGGACAGGAGTCTACAGCACTCAGCAGAGACAAAGATGAATCCACAAATTGGTATTCCAGTGATGATGAGGATGGCAGCAGTGTAACAGCCATCTTAAAGACACTAAAAAAGCAGAATGAAATGCTGCAGACGCAACAGTCCCATCAGGCTAAGCTTCAGCAGTCTGGTGTGCCTGCAACCCCCTTGATTGACCCCAGGCTTCACAAGGAAAGGGCTTTGGTTGACCCTCGACAGCATGTTCCAGATACCAGGAGAGAAGCCGAAGCTGTAATTGACCCCAGATTAGTCCGAGATACCCACAAGGCTAAGCCTATAGAGCCTGTGAACTCCAAGGCAGGTCCTCACCACCACCCACACACTAGCTCCTCTGTGGCTCAGAAGCCTTCTGCTggggaggaggatgaggagggagAGCGTGAGCTGAGGGAGCGAGCTGCCCTAATCCCGCTTGATCCTAGTCCTGGAGCTATGCTGCGTGACCCTCGCTGCCAAATCAAACAGTTTAGCCATATCCGGGTGGACATCCTCCTTCAGCGACCGGCCTTCGCTCACAGCGTTGTGTGGGCACCTGAGGATCTCATTCCACTGCTCATTCCCAAGCAGGAATCCTCTATTAATCTTCCTCTGCCACCCCTCATTGCAGATGCCCAGATGAACCGCAACCTATCCACTTCTTCAGACTATCCATCCTCCGCCCTGACTCCTCCAGATCCACGTCTGGCAGCCGCCCGACTTAGAGAAGATGTGGATACGCTAGGCATCCCCCATGGCAGGACTCTGCAGCCTCGACCTAACCCTGAGAAACCGACAGATCCCCGGACTCATAAAGCTGGAGAGGTCAGGATAAATCGGTCTGGGAGCCTGGACTCGAAACTGCCTGTCAAGAGAGAAGGTTCCTCTGGTGCGGGGGTTTCAGATCCAAGATTACAGCGAGGTGCATCTCGTCAGTCTGCCACTTCGGCTAGGTCTGATTCAGAGAAGCTGCCCCCATATGCCCCTCGCTTGGCATCTTCCACAGGTAGCGGATTGGAGAGCCCCACCACACTGCTTGGGGGCATTAGCTTGTATGATCCACGTAACCACACATTGCTTTTGCCAAAACGGGAGCCAGAGGAGCCCCTGAAAAATGCAGGCATCTTAAAGCAGACGGTGAAATGTGAGAGCCTTCCACCGCCACAGGTGCCTTCACCAGTGGTGACTGAAAAGAAGAGTGAAGAGTTAAATGAAGTCTCAGAAAACCAGACCAATGGTTCTCAGCCAGGCCAGGCCATGCCTATAGCGATGGCAGCTCCTTCTTGCTCCCCTGTGCGTGCAGCAGCACCTGCCATGCACAACTTGCCAATCCAGCAACTAGCGGGGCTCATACGCCCAGCTTACACGGACAGCCGACAGAACAGACCTACTGGCCAGGCTACCGGAGCCCAGGAGGAAGAACTAGACGATGACAAAGAAGTGGAAAAGAAGGACAGGCCATTAAGAGATGTATTTAAGACCTTTGACCCCACAGCCTCACCATTCTGTCAGTGAACACTCCTGTGTTGAGACCAGTCAGTCTCTGTTAAGAATTCACACATCactgtatatatttcatatttatttatatttgttttgtacATACACTTCACCATGCCACATGACCAGCTAACATGTTACTTAATGATTACAATCAGTCATCAGATTATATTAACATCAAGCATCAGCGTACTGACAAGTGCTCCTCAAATGGTCCATGAGATTTACTCAGAATAAATGCGGTTAGCTAGATTACCTGCAGGTGTACAGCTGTTAATACAGAGACTATTTGAGGGGAactgtcactgtgtgtttaaaaataatgtatagTGCTACTTAAAGTATAACAGTTAAATATCTTAGATCTATGTATTACATACAGGTGTAAAATTAAGCTAAGACATTTTATGAAGTAATACTGTGCTAAgcttgtaattatttaaaagtatatgTGAACATGTGGTTAATGTACTGCGACTAGATTACTTTTCAATCATTTGTGATACTTTGTGCTGAAGAGACAAACTCGAGCAAGAAAAATTAAAGACCAAAATTCATCTAgagaatacttttttttccccccttaagGTGGAGTTTATGAAATCTCGTAGCACTTTATTTTATGGACAACATTTCAATGAatggttttattgttttatgtgtttttccATATCTTTGTACTGAATTGTTTTGGTTACCTGTGTGAGAAAGGACACTGAAACATTGTCCAtcacattacttttatattgtcttaaataaattgcaaatgCTGTGACTTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62152 lncRNA downstream 10368 25675076 ~ 25675316 (-) True G52564
TU62139 lncRNA downstream 13694 25669966 ~ 25671990 (-) True G52555
TU62095 lncRNA downstream 90777 25594236 ~ 25594907 (-) True G52532
TU62072 lncRNA downstream 171878 25513417 ~ 25513806 (-) True G52509
TU62032 lncRNA downstream 225305 25459833 ~ 25460379 (-) True G52477
TU62328 lncRNA upstream 32594 25730445 ~ 25730870 (-) True G52714
TU62330 lncRNA upstream 38727 25736578 ~ 25738936 (-) True G52716
TU62375 lncRNA upstream 145161 25843012 ~ 25846113 (-) False G52759
TU62373 lncRNA upstream 145434 25843285 ~ 25846892 (-) True G52759
TU62388 lncRNA upstream 168035 25865886 ~ 25866087 (-) True G52771
XM_026939496.2 mRNA downstream 180928 25494676 ~ 25504756 (-) True msh6
XM_026939333.2 mRNA downstream 355482 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA downstream 355520 25308306 ~ 25330164 (-) False dnajc12
XM_026939252.2 mRNA downstream 594862 24812974 ~ 25090822 (-) True LOC113542016
XM_034302739.1 mRNA downstream 949796 24700830 ~ 24735888 (-) False herc4
XM_034302898.1 mRNA upstream 52202 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA upstream 52202 25750053 ~ 25770044 (-) False mertka
XM_026939300.2 mRNA upstream 75036 25772887 ~ 25791400 (-) True lhcgr
XM_034302838.1 mRNA upstream 225179 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA upstream 225179 25923030 ~ 25966974 (-) True anapc1
XR_004577835.1 other downstream 949797 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1033837 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1033837 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1645584 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 2231467 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 212167 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 1839925 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2735369 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3504081 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3981560 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile