RNA id: XM_026939167.2


Basic Information

Item Value
RNA id XM_026939167.2
length 2947
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC113541966
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25697860 ~ 25725270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcagtgagttgtttccaagtgatgagaaatccaaccagaaTAAggacatcaggatggatcaggcaggtccggagagcagaaggggtcaggttCACTGGGATCTCAGGAGAAGCATGTGTATAGAtcgaaagagagacagacagagagagagagataaaacacttcagcatggAACATTTGAGAATTACTCCATATCATTTTGCTTACTGGTCTACAACTTGTGactataaagcatttttttttttttacacatacgCACACGCGGGGGgattgtcatgtaatggttaaagaatatgTATATCGTCTTATACGACATGTCtttgtcaggcttttttttttttatttacaataaaacaaactaaTTGCCTGCGCAATTAGTTTGTTAGCACAATAGCAATATACAAAATTCAATAGCATTGTACAATTATGATATAGTAGGCTATGTAATGATATAGTTTACAGTGGCTTCATAAATTGATTCAGAACATAATAAAGCAAAACACGCCTTTTGTAGaagtagttaaaaaaaaccttgctatatttttttaattaagagaattaattaagttaattaagaGAAGGTACACCGCCATCTTGCTCCGACCAAAGTGACTTGAACGCACCTGACCCTGTCGTCGTAATCACGACTTCCCAACTCTTAAGTGCGAACTTTCCAGGCGCACTTGAACGCACAGTGAGTTTACATTTCGTGTAGTGCCTCATACGCTGTTTTTAAACCATAGTCTGAAGGAAAAGGGCGCTGAAGTGCTGATTCCGGATCCTAGCATTCAGAGCTGCGAccctgagtctctctctctctctctctctctctctctctctgtgtgtgtgagtgtgttagagaaCTGAAACTCCAGCAGGTTGTGTCTCCATCGCCCCTGAGCAAGAGGAGCTCCGAGTGGCTGCTGTTCCTCCATCTGATAACATCTGCGCATCAGCTGGgatacaaacagacaaacaaacaaacacgaGCAGTGTGTGAGGCTGTGGTTTACAGAGCGTGTCTTGGCACTTTGGACTCGAAAACACTCGAAGTCCATTTTCAGACCCCAGGACCAGAGGTCAGGCAGTGGATTTGGGAGAATGACTCTCTCACATCAGTACtgtgctgttttgtttctgtcGCTGTTGGCTTTACATAGCTGTAATGACGGGATGCAGGGCTGCATTGACAAGCAGAGGGTGATGGGTGTGCTTCGCCAGATGGAGAAATTTTTAAAGGGACAGGAGATCCGGTTTACAGAGGGTCTCAGAATAATGAAGTCCAAGCTTACCAGCCTTCAGAACTCTGTGTCCAAGTTTCCACAAGCAGACCAATCTTCACCCTTGTCCACTTGTTCTGCTCTGGAAGCTCCAACTCATGGGAAGAAGTTTGGCTCCAAGTACCTAGTTGGACATGAAGTGCACTTCATGTGCTCTTCAGGTTATCATTTGGTGGGCTCGGCAACCCGAGTGTGCCAGGAGAATGGCAGCTGGAGCGGAGTCAGTGCGCTCTGTAAAGCAGGTTCAAGTCAGTGTGCTAGTAACCCATGCCTGAATGGTGGTACCTGCACTGAGGGGGTCAACCAGTACAAGTGCACTTGTCCTCACAACTGGAGTGGGAGTCGCTGTCAGCAACAGACTCAAACAGTGGTGCAGCATCCATCTGCAGCCAGCCACAGGCTGAAGCCTAATCCCCTCTCGCCTCCCCTCTCACGTTCAGCCCCTCCGGAGTGGAGCGTGGTGAATGATCCGGAATTTAGCCGCAAACCCCGCTGCGCGAAAGTGGACCGAGCTCAGCACTGCAGTTGTGATGCAGGCTTCCATATGAGCGGCACCTCTCACAACAGCATCTGCCAGGATGTGAACGAGTGTGAGGTGTACAAAACAGACGGCGCATTACTGTGTGCTCACATTTGCGTGAACATTCCAGGCTCGTACCACTGCTCCTGCCCCAGTGGCTACAAGCTGCTTGCAGATGGCAGGAGCTGTGAGGATGTGGACGAGTGTCTTACACAGCAGCATAACTGCAGCCGTGGCACCACCTGTGTCAACACCGGAGGAGGCTTCCAGTGTGTAAATCCAGAGTGCCCACGCTTGCACGGAAACATCAGCTATATCAAGACGTCACCTCTTCAGTGTGAGAGGAACCCCTGCTCCATGACAAGCCGCACCTGTCACCTGGCCCCAAAAACCGTTTCCTATCACTACCTGTCTCTGCCTTCAAGCCTCCAAACCCCAGCTACGTTGTTCCGCATGGCCACAGCGACTGCTCCTGGCCGACCAGGACCCGACAGCCTGCGCTTCAGCATCGTGGAGGGAGGAGACGCACGAGGCATGTTTGTCATGCAGCGCTCAGACCGCCAGACTGGTGAGCTGATCCTCGTCCAGCCGCTGCTCGGGCCACAGGAGCTCAGCGTGGACGTGGAAATGGCTGAGTACTTGGATCGCACCTTCCAGGCCAAACACCTCGCCCGGGTGCATGTGCTCATCTCTCCCTATAAATTCTGACGAGGGAGAAGTTCCATAGGCGAGCTCTTGACCTTTCAGTTCTGTTTTGAAACTGGTATTATGGTAAAATTAGCTTTTTCTAAACTGAAGCATTATGGCAAAAAATGATTAatctttgtaaatattaaacactttaCTTTCAAATGGCTTTAAAAACCAAGCAGTAAAACTTAAATATGTCTTCCTGCAAAGTCTCTGCTctcaataatcttttttttgtttgttttttttagctatcTGTGTATCAgattcttttgtatttttatatttttcatagtTTTTCTCAGAATAATTTGGAACCTTGATTAtacctgtttttttaaataacacaaagTAACACATAAACAGACCAATGTGAACCtacttgatttatttatgtactgtatataggcCTTTCAGCAAAACAGCTCTTGTGTGAATTAAACAGAGAACAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA upstream 133955 25562402 ~ 25565205 (+) False golga4
TU62042 lncRNA upstream 214969 25483803 ~ 25484191 (+) True G52483
TU62001 lncRNA upstream 318385 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 405889 25293033 ~ 25293271 (+) True G52406
TU61883 lncRNA upstream 410573 25266913 ~ 25288587 (+) False LOC113542024
TU62246 lncRNA downstream 118965 25844235 ~ 25846899 (+) False acoxl
TU62264 lncRNA downstream 125470 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA downstream 126585 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA downstream 126585 25851855 ~ 25864241 (+) True bcl2l11
TU62296 lncRNA downstream 163281 25888551 ~ 25888782 (+) True G52683
XM_034302621.1 mRNA upstream 13379 25676862 ~ 25685781 (+) True LOC117596833
XM_034302623.1 mRNA upstream 13379 25676862 ~ 25685781 (+) False LOC117596833
XM_034302622.1 mRNA upstream 16011 25676862 ~ 25683149 (+) False LOC117596833
XM_034302617.1 mRNA upstream 27156 25597285 ~ 25672004 (+) True itga9
XM_026939445.2 mRNA downstream 5193 25730463 ~ 25745890 (+) True tmem87b
XM_026939444.2 mRNA downstream 5194 25730464 ~ 25745890 (+) False tmem87b
XM_034303061.1 mRNA downstream 76702 25801972 ~ 25846903 (+) True acoxl
XM_034303014.1 mRNA downstream 125330 25850600 ~ 25864346 (+) False bcl2l11
XM_034303013.1 mRNA downstream 126579 25851849 ~ 25864346 (+) False bcl2l11
TU61306 other upstream 1641273 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 1893665 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2001866 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2243611 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2584121 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1260708 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1472639 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1472639 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1472639 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2722107 28447377 ~ 28448311 (+) True G53692

Expression Profile