RNA id: XM_026939182.2


Basic Information

Item Value
RNA id XM_026939182.2
length 4656
RNA type mRNA
GC content 0.44
exon number 26
gene id itga9
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25597285 ~ 25672004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAGGGGACAGAGATGATGAGTGGATGGGGGTCAGTctgacaagacaagacaaaccCAATGGAAGAGTTCTGGCCTGTGCACATCGCTGGAAAAACGTATACTACGAATCGGAGCACATCCTACCGCATGGCTACTGCTCTGTGATCCCACCAACATTACAGGGCAGGACCCAGGCTCTCATTCCATGTTATGAAGATCATAAGAAGACGTATGGGGAAGAACACGGCTCATGCCAGGCAGGGATCGCAGGAGCTTTCATGGAGGAGCTGGTGGTCATGGGAGCACCTGGATCATACTACTGGACTGGAACAGTGAAAGTGTTCAATATCACCTCCAATACACAATACAGCCTCAACAAAAATCAGCTGAGTTCTCAAAGATACAGTTACCTTGGCTATGCAGTGACAGCTGGTCACTTCTCCTCGCCTACTGCCATCGATATCGCTGCTGGTGCACCTCAGGATGGTGGCGGAGGAAAAGTTTACGTCTTCAGAATCGACGGGGTCTCTCTTGTGAAGGTCTTTCAAGCCTCAGGGAAAATGTTGACCTGAACGCAGACGGACTCTCAGACCTGCTGGTCGGGGCACCGATGTTCACTGAGGTTCGGGATGAAGGCCAGGTGTCTGTTTATATCAGCAGGGGCAATGGAGTGATGGAGGATGCGATGGTTTTGAATGGAGACAATGCATACAATGCCCATTTCGGAGAGTGTATCAGTGCCATTGGGGACATCGATGATGACGGGTACCAAGATGTGGCAATAGGAGCTCCTAAAGAGGATGACTTTGGGGGTGCAGTGTACATCTACCACGGTGATGCTAAAGGAATAGTCAATAAGTACTCGATGAGGTTGTCTGGGCGAAGCATCAATCCAACCTTCCAAATGTTTGGCCAGTCAATATCTGGCAATGTAGACATGGATGGGAACGGATATCCAGATGTGACAATCGGTGCATTCATGGCAGACAGTGTGGTGTTATTAAGGTCTAAACCAGTAATCACAGTGGACGTGTCCATCTTTCTGCCGACCTCCATAAACATCACCGTGCCTCAGTGTCATGAAGGTCCACAGCATCTCAACTGCTTTAATGTGACTGTCTGTATGCTCTTCCGTGGGAAACTTGTGCCAGGACGGATAGAGCTGTTGTACAATCTAACAGCGGATGCAGATAAGCGATACAAAGGCCTCTCATCACGGGTCTATTTCACACATGGCGGAGAGCAGACTGGTGCTGTGAGTAAAAACTTCAGCCTTAGCATCAACCAGCAGGAGTGCCATCACTACACAGCCTATGTACGGAAAGAAGTGAAGGATGTGTTTGCAGCCATCACTTTTGAGGCATCGTACAGGCTGGGCAAACATGTGCTGGATGTACATCAGGAGCATGAGCTTGCTTCACTCTCTCCTGTACTGCGCtggaggaaaggagagaagaTTGCAGCAAGGAATGAGACTTGGTTTGAGAAGAACTGTCTGTCCGATGACTGTGCTGCTGACCTGAAGCTACATGGCAAACTGCTGCTTTCAGGACATCACATCAGGCCTCATCTTGCTCTTGGAGGGGTGAAAAATGTCTCCCTCAATATAACCATTGTCAATGCTGGAGATGATGCTTATGACACCAACATCTACCTAAATTTTTCCAGGGAGGTTCACTACATAAACTTTCTGCAAAGGGAAGAGAAGGGAATTTCCTGTGAACTGATTCAGCTGGACTTCCTCAAATGCAGTGTGGGATTTCCTTTCATGAGAGCCCAGACTAAGTACCATCTGTCTGTACTTTTTGACACAAGTCATCTGTCTGGTGAAAATGACACACTGCTATTTTTAGTACATGCCAGGAGTGCCAACCCAGAACATGAGAACAAATTACACGATAACACGTTGGAGCTGTCCATCCCGCTGATGCTTGAAGTGGACACAGCTGTGACTGGTGTGGTTACTCCTTCTTCATTCGTGTATGGAAATTCTGTTGACTCTTCTCGCTTTGTTCAGCTGGAGGACTTGGAGTGCAACTTCCAGCCTCTCAACTTTACGTTTCAGGTGATAAACAATGGGCCAAGCAGACTGCCGGGCTCCACCGTGGACATAAGGATACCTAACATGCTGGTGGGCAATGGAGCAGACATGTTCCACATCATAGACACACAAGTAGCTGAGGGCAGAGGGAACTGCACATGGCACAGAAACCCCACACCGTGCATCATCCCCCAGGACAGAGAGAGTATTTTCCACACCATCTTTGCGTTCTTCACCAAGTCTGGCAGGAGGGTCTTGGACTGTGACCGGCCAGGAAGAGCCTGTCTAACCATTTCCTGTAGCCTAGGATCCCAAGCTAAAGACGAAGCTATAATTATCGATGTGCAAATGctactgaacactgaaacacttAAGAAAGACAGCTCTTCGGTTATTCAGTTTGTGACACGAAGTCACGTCCAAGTGGACAGCCGAGCTATGGAGGTGTCCAGCGGCCTACCAGAGGACATTTCTCTGGTGTTTGAGGCACTGCACAGTCAGGAACCCAGGGGTTACGTGGTGGGCTGGATCATTGCCATCAGTCTGCTAGTGGGGATCCTCATTTTCCTCCTGCTGGCTGTGCTGCTCTGGAAGatggGATTTTTCAGGCGGCGTTACCGAGAGATAATAGAAGCAGAAAAGAACAGGAAAGACAGCGATGAGAGCTGGGATTGGGTTCAGAAGAGTGAATGAGAGCCTGGGCTCGTTTCAGATGACCCACTAAGCTGCTACCTTCACCACGGCCATGTCCTTAGACTCATACCATCCAGTCTTCCATATGTGGAAGAGAAGAATATTCTCCAAATTTTTCGGAGCCTTGACACTTTTTCTGTAGGTAGAAATGGATATTTGGCATGACTACGTGGTTCACCAGATATGACTCACAGTGGAATTCCATATGATCCCAACGGAGGTGGCCGTCTGCCAGTTGGAGCGGAGAGACGgaaggaaagaaatggagaCTTCCACCAAAGGATATGGATATTGCATCAAAACTAGCAGATCATAAAAACCCTCAGGGCGCTGTTTAAGAGCAGAGACctatttttttacatgtattcatgtatgttgtataaatgagagCTTCAGGAGGGCTTGTAGATTTTTGGCCTTCAAACATATATTTTTGGTATTGATGTTTGAAAGCACTGATTACTGATACATGCTGAAGACTTGATACTCTTCGTGTAAAGATCAATGTTCCAGGAAGAACATATAATAGTACAATAAGTTGGAAACATCCTGCAAATGAAGacttctgtttcttttcatttctcatcCATCCAATTTGCGAAAGATGTGATGTTTTGGTTTTTGCTTTTGGTTATTTATCAGTTCGAGAAGAAACAGAGAGGCTCATGTCAGTGCAAATTACCAATTCTTTAATCATGCACATTTGCACTGGATAATACTCCATTTTATAAATGATATGAACAATTCTATGCAATCCCTTTAGCCCTGCGTACcttctttgatttcttttgaAAGTAAACAATAGCATAAATCGTCCGccaaaaaagtataataatgcAGTAATCTTGAGTCCAGCCTTTGCACGCATCGTTTTCTTAAagctttcactgtttttgtgaagctttcactgtttttgtgaagctttcactgtttttgtaaaGCTTTCACTGTTGTTGTAGTGTAATTATTCTTAGCCTCTGGTCAAATATTGCACCTAAAGATAAATCAGAATGTGCTGCCCTTCATGACTGGGCCTAAGCTCACTCTTTAGGGCTTTTGGGAAAAGTTTTATGTCAACACATTGGAATGCAAAGCTCCCTCATAACTCAGAGCACATCAGTTATAAAAGCAAAAGCCCCACTCCAAGCAGAGGTGTGCCGTCACTTCTTTCAAAGCGGTTTTATTCAAGATCATTGGCCAACGAAGCTTAATTGtaaaatgcagcagtaaaacAGAACACAATGAATACAGAAAGTATTAAAATCCGTCATCATGTTCTGGTTTCTGGTGTGAGGGCCTAAACCAGAGAGCAAACTCTAGccatcattttctcattttccttcAATTCTTACCCCATTATCTTTATCATACACTGAATCTACAACCTATATATCATTTCTCTTTGAatggaaaatgtttataaataatagaaatatttgttaaaacCATAGATGCCATCTGGCTAAGAATTTTTTATTAGCTCTATATTTCACCACACATTTATACCAAAGTCAGCTATACCAAAGTCAGCTAATTTTCCAGTTACTTCACTGCTTATCATTCACATTTGCTGATTTACTGATATCTGAGAGATTGGCATGAAGAAAATTGCTTGTATGTTGTATGAATGATCCATTATGTCACTGGCATGGCAAACGTAAATTCACATTTCTCCTCGGCACCTGGCGAAGTTTTTCGCATGGACGTGCATCTGAGAGAGAAATACTTGACATTAAATAGGTATTTAAGTATTGTGTATTAACTGTGAGCGTTTTAGCAGTATTATCACTTTTTTTGAATAAACTACTGtcacagattttcatttttgtaaatgcAGTGAAGTCTATGTTGTACAAGTTATGCGAGTTGTTCAAGTTGTATATTTGTCTGttgatttttccattttaaaattaaagttcaCAACTGGATGTCTTTTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA upstream 41979 25562402 ~ 25565205 (+) False golga4
TU62042 lncRNA upstream 122993 25483803 ~ 25484191 (+) True G52483
TU62001 lncRNA upstream 226409 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 313913 25293033 ~ 25293271 (+) True G52406
TU61883 lncRNA upstream 318597 25266913 ~ 25288587 (+) False LOC113542024
TU62246 lncRNA downstream 172231 25844235 ~ 25846899 (+) False acoxl
TU62264 lncRNA downstream 178736 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA downstream 179851 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA downstream 179851 25851855 ~ 25864241 (+) True bcl2l11
TU62296 lncRNA downstream 216547 25888551 ~ 25888782 (+) True G52683
XM_034301217.1 mRNA upstream 12248 25562416 ~ 25594936 (+) True golga4
XM_034301219.1 mRNA upstream 12248 25562416 ~ 25594936 (+) False golga4
XM_034301222.1 mRNA upstream 12248 25562416 ~ 25594936 (+) False golga4
XM_026939503.2 mRNA upstream 68859 25515217 ~ 25538325 (+) True kcnk12
XM_026939497.2 mRNA upstream 112651 25471476 ~ 25494533 (+) True fbxo11a
XM_034302621.1 mRNA downstream 4858 25676862 ~ 25685781 (+) True LOC117596833
XM_034302623.1 mRNA downstream 4858 25676862 ~ 25685781 (+) False LOC117596833
XM_034302622.1 mRNA downstream 4858 25676862 ~ 25683149 (+) False LOC117596833
XM_026939169.2 mRNA downstream 25856 25697860 ~ 25725270 (+) False LOC113541966
XM_034302624.1 mRNA downstream 27156 25699160 ~ 25725270 (+) True LOC113541966
TU61306 other upstream 1549297 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 1801689 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 1909890 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2151635 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2492145 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1313974 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1525905 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1525905 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1525905 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2775373 28447377 ~ 28448311 (+) True G53692

Expression Profile