RNA id: XM_026939187.2


Basic Information

Item Value
RNA id XM_026939187.2
length 4768
RNA type mRNA
GC content 0.45
exon number 17
gene id fam160b1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29696277 ~ 29707979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TgttgtgtagtgcactatgatGTACAAGTCATCATTTCAaaccctatatagtgcacttatATAGGCAGGATGAAGGTATTTGGAATCGAGCCATAGtccacacgcacagacacaccgACCGCGCGAGCTCCCTCTGCTGCTGCTCTGTAGCACTGATTCCTGCTTCTTGGCCATGAAAACGCCACGGTGGCTTTAGCTggcaaaggtgtgtgtgtgtgtgtgtggggctgttTACTGAAATAAACACGTGTCCGGATTTAAGCGCCTTGTTTTCAGAGTTTGTCTGGGGTTTTTTTCGCGTAAAGGTCGCTTTATGAAAGCTGCAATCTGGATCGCGGCGGCggaaacagaaagaagaagatAGAGGAATTCTCTCGGTCTTCTCGCGAAAAACTTGTCCAGTCCAAGAACAAGATGTTTTCCAAATTCACCTCGATCCTGCAGCATGCGGTGGAAGCGCTTGCGCCATCACTGCCCTTGCAGGAAGACTTTGTCTACCACTGGAAGGCcatcacacattattacatcGAAACTTCAGATGATAAAGCCCCAGTAACGGACACTAACATCCCTTCCCACCTGGAGCAGATGCTGGACATCCTGATCCAGGAGGAGGCGGAGAGGGAGTCGGGTGAGACGGGACCCTGCATGGAGTACCTGCTTCATCACAAGATCCTGGAGACACTCTACACTCTGGGCAAGGCCGATTGTCCACCTGGTATGAAGCAGCAGGTTCTGAACTTCTACACCAAACTACTGGGCCGGATTCGCCAGCCACTCTTGCCTCACATCAACGTGCACAGACCTGTACAGAAACTGATCCGGCTGTGTGGCGAGGTTCTGGCTGCTCCTACAGAGAATGAAGAGATCCAGTTTCTCTGCATCGTCTGTGCCAAACTCAAACAGGACCCCTACCTGGTTAACTTCTTCTTGGAGAATAAGGGAAAACGAGGAGACGACAAAGAATCAGGAGCTGACGGGCTAAAAGAGGATTCGTCGTCTCCAGATACAGGTCAGAAGCAGAGTGCTGGCGTAGCGTGTCACGCCAGCAGCCCTGCGGACGGAGCCAGAGCTGCCATACACACCAACAACGCCAACAACAGCTACAACCTGGTCAGCTCTCTGCTCAACCTGACCAAGAGCCCAGATGCCCGAGTGGTGGTGAAGGCGTGTGAGGGTCTGATGCTGCTGGTCAGCTTGCCCGAGCCTGCAGCGGCTAAGACGCTAACGgaaagcacagagctgtgtgagCTGCTCACGGCCCGCCTCACCACATTCTATCAGGCGCTGCCTCAGTCTATGGACCCGCTCGATATCGAGACCGTCGAGTCTGTCAACTGGGGGCTGGATGTGTACAACTTGAAGGAAGACGCTGCTGCGTTTGCAGGGAAGCGAGCTCTCATTTCCTTCCTCTCCTGGCTGGACTACTGCGATCAGCTGATCAAAGAGGCCCAGAAGACTGCGGCAGCAGCTTTAGCTCAAGCGGTGAGAGAACGCTTCTTTGTACCTGTGATGGAGCCACAGCTCATGCAAACgtCAGAGGTGGGCATCCTGACctccacagcgctgttgaatagGATCATCAAGCAGGTCACATCGGAGGCCTTGCTGCAGGAGACTGTCTACTTCCTGTTGGGAGAAGACCTGGGTCCTGAGACGCCAGCCAGCATTACTCAGAATCCCCTGAGGCACAGACTTGTAGGGCACTGCGACCACCTTTCAGACGAGATCAGCATCATGACTCTGCGGCTGTTTGAGCAGTTGCTCCAGAAGCCGTGCCAGCACGTGCTGCAAAACCTGGTGCTGCGCAGCATCAGCGAACGCAACTACATCGAGAACAAGGCACAAGACGAGCGCGAGGAACGCGAGCACATGGAGAACGGGCAGCCTCACGACGCTGTTGATTTGGAAGAGGACCCGCTGTTCTCTGACCTTTCCCCAGATACCAGACTGTCCAGCCCTGATTGGCTGAGCTGCTCACCTCCACCTAGCACAGAACACACAAAGCCTGATGGGAAAACGGAGGTCCACAAAATTGTAAACAGTTTCTTATGCTTGGTTCCGGATGAAGCTAAATCGTCTTATCAAGTTGAAGGCACTGGCTATGACACTTACCTGAGAGATGCACACAGACAGTTCCGAGACTTCTGTGGCATCTGCCAGAGGTGGGACTGGCACGGCACCCCGAAGCCTATTGAGAAGTGTAACCTGGACATCCCCTTCTTCGAGGGACACTTCCTTAAAGTGCTGTTTGACAGAATGGGACGTATCCTAGACCAGCCATATGATGTCAACTTGCAGGTCACATCAGTGTTATCGAAGCTGTCTTTGCTGCCCCATCCTCACTTGCACGAATATTTGCTGGACCCCTACATCAATCTGGCACCTGGCTGTAGATCCCTCTTCTCCGTCATTGTCAGGGTGGTGGGAGACTTGATGTTGAGGATCCACCGTATCCCAGATTTCAACCCTAAACTGCTGCTAGTGAGGAAGAGGCTGCTCGGGATGGAGCCAGAGGGCTCGAGtgtTGATCACGTGACGTTGCTGGAGGGAGTCATCGTCCTGGAGGAGTTCTGTAAGGAGCTGGCAGCCATCGCATTTGTTAAGTTCCACACTTCTGCGTCTACATCCCCCTGAGCTCCTGCCCACTGTGCCCAGGACACAAGCATCACTGGTACAGTTCAGACTTGACACAAGAGTGGGAAGCTGGCACAGGAACCACCAACTGAATCCTATTCATCCTTCAGATCAGGCTCCTGCCTGTGAAGATCCAGAGGGTCTACACTCATCTGTCTGAGAACATGCAGGGGAGATGAGGCTGGAGGAAAAAGCCCACAGGTCAAACTTGCACAGGTGTGATGGGGAAAGGTGTTTGTAGAAGCACTCTTGATACATATTTTTGTGCTTTATCCCTTTTTCGCTTCATCCAAAtcgtctcttcttctctctgttcattttgccattttatatgttatttttaaatttgcctTTTATTGTTCATCTggcttattgttttttttttttttttgtttttttttcttcttctttctgttcCTCTGGCTTTGCACATGAACCTGCTGacttctagatttttttttttaatcccctgTGTGTTTCACCTCGGACAGAAACACACTTATTTATTCTTGTCCAAAACAGATATTAGTTCTGTAAGagctaaaaatatacataatgtcAAAATTGATCTGTTAGAAATGCTAattaaaacagctctgagcttTATCTAAAACCGAttaattgtgtgtaaaattgaATTTTAATAAGCTGTTGTTACAGTACTGTGCTTATATTATTTTCTTGTGGGGAGATGATACCAAATGATGGACTATGTATCCAATAATGCATATGCAACCTAAACCATTATCTGTAATGTTGATATTTTGATAACTCAGGATCAGAAATCGAactgtgcttaaaaaaaaaaaaaaaaaagtagaatcAGCAGACTGATCTGCTTTAATACTATTCATTTTCTCAGTCCTGATCCCTCTTTCATCTGTAAAAAGATATAATGTGGACTCTGAATGTTCAAATTGGACTGCGCAGGTTTGCACATCAGAAATCGGATTTCACTGGAGCGTCCTTGGAGAACTGTGCGTCACATTCATGACAGTGTTTGGAAACCTTTCATTTTTAAGGGTTTACCTTCTTCATTGCCTTACATgtgtatgtttaatttatgtcgTGTGTGTGCCTTCTACTTCTTTAGGATTTAGCTGTTCTTGTCACTCTTACAcgttttacagttatttattgtGGGTAAGAATTTActatttgaattttgaattttagaGAATTTTGCTTCTCTTATGATTTCAGTATTATTACAGAACATCTGGCATAGGTTTTTTTCCCTTATCAGCTATGTTGAAACATACACCAGCAATAGTGTTAACcagacttttattttttctgtgaaaTGCATAAACATAGGTTTACAATGCTGAAATTGTCCATTTCCTGTACAGATTTGTGAAACAATTAAGGCCTGTTATTAAGGGGACTGTGCAGgattataattttttgtttgtttgtttgtttgttttgttttgttttgttttttgatgtaGGCATGTGTGGATAATCAATTCTGCAGTCTGTAAGGATTACAGCataacagggcatgctgttataggaacataatccTAGATGGGATGGTTACCACTcagtaacagcatgccctgaagtgttttattcctcttataccacagcaaagaGGATACTTATGCAGGCAGCATTTATGGCCATTTGTGCTCTTGAATAAAGGCCACGTCTCTGGCCTTAAGCCTGCTGTCACATTGGAATTTACAATACATTAGACGTTATAATGTATAGTGGAAGCTAAATCCCAAATGTGATTACTGGTAAACATGCTGAGATGATATAAACCTATTAGGTAGTTATTGTGATGTAATTACCAGCACATGCCTATTTAAGCCCTTTTGCTTGGCATTTTAATTCCATTTAACTTGGAGAACATTTTCTCCCCTGCATATTGATCCAATTAATCAAACTTGCAGTTGACATATAATTAAATTGCACATTCACAGTAGACAACATTGTCCTATTTAATTTGTACAtatgcaaaactttttttttcttttcttttagtaTGAAAAGGTTCTGTCATGTACAAGTGGCTTGTTTATTGTAAAGATCCTTATTTTTTTGATCTTGCACATTTTATACCATAAAATTCATAAGAGGTTTTCTCTAatcatgtatatatgtgtacagtGATGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64762 lncRNA upstream 11278 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA upstream 11278 29684009 ~ 29684999 (+) False G54958
XR_003404270.2 lncRNA upstream 221976 29451896 ~ 29474301 (+) True LOC113542173
TU64518 lncRNA upstream 511822 29124493 ~ 29184455 (+) True G54725
TU64516 lncRNA upstream 552897 29118066 ~ 29143380 (+) True G54724
TU64777 lncRNA downstream 37184 29745163 ~ 29748504 (+) False ablim1a
XR_003404265.2 lncRNA downstream 157777 29865756 ~ 29870830 (+) True LOC113542139
TU64967 lncRNA downstream 431296 30139275 ~ 30139776 (+) True G55129
TU64966 lncRNA downstream 432245 30140224 ~ 30145109 (+) True G55128
TU64971 lncRNA downstream 440122 30148101 ~ 30157041 (+) True G55132
XM_026939342.2 mRNA upstream 335168 29163415 ~ 29361109 (+) False LOC113542066
XM_026939341.2 mRNA upstream 335168 29163586 ~ 29361109 (+) False LOC113542066
XM_026939339.2 mRNA upstream 335168 29164629 ~ 29361109 (+) False LOC113542066
XM_026939340.2 mRNA upstream 335168 29170284 ~ 29361109 (+) True LOC113542066
XM_034302991.1 mRNA upstream 335168 29267336 ~ 29361109 (+) False LOC113542066
XM_034303133.1 mRNA downstream 4358 29712337 ~ 29747481 (+) False ablim1a
XM_026939431.2 mRNA downstream 4359 29712338 ~ 29747481 (+) False ablim1a
XM_026939428.2 mRNA downstream 4359 29712338 ~ 29747481 (+) False ablim1a
XM_026939426.2 mRNA downstream 4360 29712339 ~ 29748505 (+) True ablim1a
XM_026939433.2 mRNA downstream 4360 29712339 ~ 29747481 (+) False ablim1a
trnav-aac other upstream 588363 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 590761 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 1247966 28447377 ~ 28448311 (+) True G53692
XR_004577886.1 other upstream 2489882 27197909 ~ 27206395 (+) False znf451
XR_004577899.1 other downstream 4279 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 229569 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 646343 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 771953 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 2077806 31785785 ~ 31796326 (+) True G56222

Expression Profile