RNA id: XM_026939191.2


Basic Information

Item Value
RNA id XM_026939191.2
length 1556
RNA type mRNA
GC content 0.46
exon number 7
gene id zfyve21
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29686730 ~ 29695063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTATTATGTGACATCTTATAGAGTGAGCCTAGGTAGGGAGTAAGGAAGGATTTGGGATTGAGGCAAAAGCAAAGCGACGCCAGGTTCACGGTGGTACTGCTTGCGTACGCAGACAGCGAGTGGAAGGGAAAATGTCAGCCTTGCCTGACGGCAAAAAGCTGGTGCGAAGCCCGAGCGGACTGCGCATGGTGCCGGAGAACGGAGCGTTCAGCAGCCCGTTTTCTTTAGACGAGCCTCAGTGGGTTCCGGATAAAGAGTGTCCCAGATGCATGCAGTGTGACACGAAATTTGACTTCATCACCAGAAAGCACCATTGTCGACGATGTGGCCGGTGTTTCTGCGATAAGTGCTGCAGTAAGAAGGTGGCCTTGCCCAGGATGTGCTTTGTAGATCCAGTCAGGCAGTGCGGGGAATGCAGCGTCATCTCGCAGAAAGAACTTGACTTCTATGACAAACAGCTCAAAGTGCTCACTGCAGGAGGCACATTCCTGGTCACAGTAGGCTGCTCGGAGAAATCAGAGACCATGGTGTGCCGCCTGTCAAATAaccacagATATCTGTTCCTGGATGGAGAAAGCCATTTTGAGGTGGAGTTGTCTCGGATCTCCACTATGCAAGtgctgacagagacagagggctCGACTCCTGGAGGAGGCATGTCTCGTGCCACAGGCATGCTGCTGCATTATAAGCCCCCGGGCGCGCAGGACTCTCAGCAGCTTCGCATGGAGGCAGCCGACGACAAGAAGAGCGCCTCCTCCTGGCTCGCCGCCATGCACAAGGCTGCCAAACTTCTGTACGAGTCAAGGGACCagtaaaataactgaaataaaggCACAGAGCTGAAGAGGAACAGGAGGAGTGTTCAGACCAAGAGAGAAGGATGCGTGTTTGTTAGAAACTCATGTGTACTCCGCAATGCCTACTTGCTTTCTATCGGACCTCTGCTTTCCGCTTCCCATTTGGATTAACTGGATTGGTCACGTGACTCGTCCGTCACTCCAATAGGGTGGACCAAGTTAACCATTGATTCTAGtgcaatgtatatatatatatagacattatATATGCACAATGTTCTACAGTGAATACGTTCAAGTCGAGtcatatatgattttttttttttctagttacGAGTCAAATAGTCCTATTTTAACACATAATActctgtatatgtatatctaCATTTTATTACCAGTATATTCACTTGTAACACTTTGTAACTGTGCCTCCAAATCACcagtacacactacaccaaGCAGTTAATTTGATTATCAAGCAGGTTTGAGCATTTCTGCTTTTTAACCAAGTATCCATATCCCGTTATTTTCCATGGTCTCCATATGAAGTTTGTCGTAACACTACAGGTCAGCCccggtaaatgtaaatgaagctcACTTTCCAAGAAAGTACTGTTTGTGCTCTTGCGAAATCTCCATACAAGACTTCCTCATGAATCCATGGTCAGTattcagaaaacagaaaatctgAGGTCATTCTGTTTTCTCccttaaaataacttttttttgtaataaaaatgtgttgtaatACAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64790 lncRNA downstream 3205 29680123 ~ 29683525 (-) True G54976
TU64755 lncRNA downstream 47380 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA downstream 47380 29638586 ~ 29639350 (-) False LOC113542002
XR_003404243.2 lncRNA downstream 47391 29631001 ~ 29639339 (-) True LOC113542002
XR_003404254.2 lncRNA downstream 416710 29269096 ~ 29270020 (-) True LOC113542069
TU64791 lncRNA upstream 10687 29705743 ~ 29709036 (-) True G54977
TU64885 lncRNA upstream 177992 29873048 ~ 29876760 (-) False LOC113542120
TU64886 lncRNA upstream 177992 29873048 ~ 29876760 (-) False LOC113542120
XR_003404262.2 lncRNA upstream 178004 29873060 ~ 29876760 (-) False LOC113542120
XR_004577796.1 lncRNA upstream 178004 29873060 ~ 29876746 (-) False LOC113542120
XM_034301980.1 mRNA downstream 1866 29682545 ~ 29684864 (-) True LOC113541985
XM_026939311.2 mRNA downstream 1066705 28610623 ~ 28620025 (-) True flrt3
XM_026939312.2 mRNA downstream 1165901 28515778 ~ 28520829 (-) True ephx5
XM_026939483.2 mRNA downstream 1181453 28504100 ~ 28505277 (-) True LOC113542138
XM_026939117.2 mRNA downstream 1185332 28499606 ~ 28501398 (-) True LOC113541930
XM_034303164.1 mRNA upstream 78329 29773385 ~ 29779069 (-) True dact2
XM_026939507.2 mRNA upstream 87207 29782263 ~ 29788784 (-) True eif3s6ip
XM_034302579.1 mRNA upstream 184239 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA upstream 184239 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA upstream 184239 29879295 ~ 30109197 (-) False cdh23
LOC113541988 other downstream 5004 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 484727 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 1251319 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 2145431 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3776611 25910018 ~ 25910119 (-) True LOC113542183
TU65059 other upstream 416775 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 416978 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 417266 30112322 ~ 30122655 (-) False G55209
XR_004577811.1 other upstream 457852 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 458431 30153487 ~ 30161223 (-) False khdrbs1a

Expression Profile