RNA id: XM_026939215.2


Basic Information

Item Value
RNA id XM_026939215.2
length 2531
RNA type mRNA
GC content 0.49
exon number 4
gene id slc30a10
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31613602 ~ 31620331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCGTTAGGTGCTGCAGATGTGAACGGAAAGActacagagaggaggaggaggagcgtgAAGGGCGCGCGCGGGCGCGAGGCGGTGCCGGTGCGGCTTTAACGGAGCCGCTCGGCGCGCGCTTCCTCAGTGAGCTCAGCAGCTCTGCGCTCCGTCGCGCGCATCACCATGGGGCGCTACAGCGGCCAGACATGCCGCCTGATTTTCATGCTCGTGATCACGGTGATATTTTTCGTGGCCGAGATCGTTGCGGGTTATCTGGGGAACTCGCTGGCGCTGGTGTCGGATTCGTTCAACATGCTGTCGGACATCCTGTCCCTGTGCGTGGGGCTGGCTGCGGGCAGACTGGCGCGCCGGCCCGCGTCTCCGCGCTGCACGTTCGGCCTGGCCCGGGCGGAGGTGGTGGGCGCGCTGGCCAACGCGGCGTTCCTGGCGGCGCTCTGCTTCTCCGTGTCCGCCGAGGCGCTCAAGAGGCTGGCGCGGCCCGAGGCTGTGGACGAGCCGTTCATCGTGCTGGTCGTCGGCTCGCTCGGGCTCGCGGTCAACGTCGTCGGGCTGCTCGTGTTCCAGGACTGCCGGTGGCTGTGCgggaggaaggaggagggcAGAGACAAGTCTTCCGACAGCGACGGGAAAATAGTCATGAACGGCGAAGCAGGCTCTGAGCTGGCTGCTTCACGGCAACAAGATAAGAAGCAGAGCGACGGCCCACCGCTGAACATAAGAGGAGTTTTACTCCACGTGCTGAACGATGCTCTGGGctcagtagtggtggtggtggcctCAACGCTGTTTTACGTCTGGCCCCTGCCGCCCGACACCCCCTGTAACTGGCAGTGTTACGTGGACCCTAGCCTGACGCTGGTCATGGTGGCCATCATCATGACCTCAGCTGTTCCTCTGGTCAAAGAGACCACCAGAATCCTGCTGCAGATGAGTCCACCTGACCTGGACGTCTCCATGATCTtggAGGACGTGTGCCAGCTGCCCGGCGTCCTCGGCGTTCACGAAGTGCACGTGTGGGAGCTGGCCAAGGATCGGAACGTGGCCTCCATGCACGTCAAagtgacctctgaccttgaAAACTCTAAAGGCGAAATCCGGCGCCTCCATATGCAGATCAGAGAGGTGTTCCATCGACTGGGAGTCCACAGCGTCACTCTTCAGATGGAGTTCACCGACGAGGACATGGAGAACAGCCACTGCAGCACTCCGTGCATCTCCTACGACTGTCTAAAGCAATCCTGCTGTCCTGCCGATCCAAAAACGCAGAACCATACCGATCTCCATAAAGTGAACAACTCCCTTTCTTCTGGAGAAGTGGCCGTTGACTTTGCAGATGGGAATGGAGAGGAGGAACCAAAACAAAAGGAGAGCACGCCGTTTTAAACCTTCAGGTCCGGCTTCTCTAACTAAACTGAGCTTTAACGGAGTGTGTGTCCCAACGCCCAGaatggcagccattttaagaaacaTCCTAAACGCTAGAACCATAGAATCCACTCAAAACCAGTCGTTACAGATGAGGGACTGTGCATTTtccccagaatgcactgcaagCATACACATCATTCAGATGATACTCATTAAGCTTAACTGAACCTGgtcatttagtttcattaatgCTTGCCCTAACCGCTAATTAGGGGGCGTGTGATAGGACAGATATATTGTTATACTAGAAGCTAGCTATATTATAGCACAACTATAGCTACTATATTTCCgctatacacattacacatcaaCATAGTTAACAAGctgcaacaaaacaaaccaGGGTTTGATAATACTTTTAagatttacataaatattaaacaccaAAAAGGAGgcaaattttaattttcttagtttaacattttgcaattttaaaggttcagtataatattttaacatcacTTCAGCcttttataatgtaattagatgtaaaaaaaagttgaaacattttattgaaaaaggacaaaataatATCTTAGAAAAGTATTGCCCAGCCCAACTGCTAATTAGCCAGTTTGCTAGAAGACTCTTAGCTACTGACTAGGTGACAATGCTAGGAGGCTTTGTATAAAAACATTACCATTTGTCTGCTTTTAGTTGGTCCTGGCCTGCCTTGATCTGGTTTTacatatactttatttttaatcaaatttaatCTAGACATCTTTTCTACATCCTCAAAGAGACGTATCATAATCACATCATAATCCATTGCCCTGGCTAAAATCCCACTGCCTCATAAACATGGCAAAAATAACCAACAAATTCTATCAGACCATAGAGTTTGGCTCCTGTTGGTTTTTGTCCGGAGAATAAAGCTACTACGGCTCTCTAAAGCTACCCTTAAACATTCCAGATAAATATTACCTCAGACAGGtgctgctaactagctagctatggAAGAGGCTACAGTAGTGCAAATTTATATTGAAGAGCCATATTTCTAATATGGCTCTGAGAAACTCCCTGGAATATTCCAGATAAAAATCAAGGAGACTAAGCAGAGATTTTCCtctattaccaaaaaaaaaaaaaaaa

Function

GO:      GO:0044765

KEGG:

id description
K14697 SLC30A10, ZNT10; solute carrier family 30 (zinc transporter), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65916 lncRNA downstream 290138 31323154 ~ 31323464 (-) True G55992
TU65343 lncRNA downstream 990397 30619177 ~ 30623205 (-) True G55449
XR_004577790.1 lncRNA downstream 995415 30593157 ~ 30618187 (-) True LOC113542125
XR_004577791.1 lncRNA downstream 995417 30593157 ~ 30618185 (-) False LOC113542125
XR_003404264.2 lncRNA downstream 995425 30571345 ~ 30618177 (-) False LOC113542125
TU66118 lncRNA upstream 12764 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 36720 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 36720 31657051 ~ 31675951 (-) True LOC117596876
TU66258 lncRNA upstream 66932 31687263 ~ 31687472 (-) False fndc5a
TU66264 lncRNA upstream 108442 31728773 ~ 31730112 (-) True G56279
XM_026939213.2 mRNA downstream 64969 31545901 ~ 31548633 (-) True LOC113541990
XM_034303155.1 mRNA downstream 88702 31519040 ~ 31524900 (-) True LOC113541870
XM_026939480.2 mRNA downstream 587757 31022661 ~ 31025845 (-) True si:ch1073-126c3.2
XM_026939519.2 mRNA downstream 607140 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA downstream 607140 30920905 ~ 31006462 (-) True gfra1a
XM_034302651.1 mRNA upstream 58052 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA upstream 58052 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA upstream 58052 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA upstream 58052 31678383 ~ 31830928 (-) False fndc5a
XM_034302645.1 mRNA upstream 58052 31678383 ~ 31830928 (-) True fndc5a
TU66090 other downstream 12917 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 64969 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 753096 30860436 ~ 30860506 (-) True trnag-gcc_4
trnag-gcc_3 other downstream 761595 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_2 other downstream 858126 30755406 ~ 30755476 (-) True trnag-gcc_2
TU66257 other upstream 207483 31827814 ~ 31829484 (-) True G56272
TU66291 other upstream 216851 31837182 ~ 31838235 (-) True G56303
XR_004577843.1 other upstream 619270 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 730470 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 754005 32374336 ~ 32389144 (-) False ndufaf1

Expression Profile