RNA id: XM_026939217.2


Basic Information

Item Value
RNA id XM_026939217.2
length 3961
RNA type mRNA
GC content 0.47
exon number 15
gene id hif1aa
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33306312 ~ 33321663 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACAGTGGCTGATTTTTTGGCACTAAGGTGGTTTTGGTCGAGTGGATGTTATGCGGCTGGCTTCCTGCAGTGGATTGGAGAAAGGAAGTTggagaaataatgaaaatatttgccTCTAAACGTGAGGAATACGGGGGACGTTTGTTGGCCGTTGCCTAGTGACGACTCCGATAAAGAGgctcgcgcgcgcgcgctcacGCGATTCCAGAGAGCGAGCGCGGCTCAGATGACGCTCGAGCGACGCGCGAGACCGAGCCAGCGTCAGTTTGTTTAGCTAAAAGTTTAGCATTTGGACGCGACGTTTTCTGAAACGGTttccttgtttatttatttatttatttattttcgcGGTTTTTTGAAACAATCTCCTTTCTCCACGGGCCACTGAGTTGGTCAGTAATCTCCATAATGACTTCAGGAGCCACAGCTGAAAAGAAAAGacAGAGCTGTGAGCGGAGGAAGGCGAGGTGTCGTGATGCGGCACGCTGTAGGCGGGTGAAGGAGACGGAGGTGTTTAATCAGCTGGCCAATCAGCTTCCTCTCCATCACAGCATCACCGAGAGCCTCGATAAAGCCTCGATCATCCGTCTCACGCTGAGCTACCTGCACCTGCGCTCGGCCCTCAGCACAGTGATGATGGGCGAGCAGTCCGAGTTGGACACTCAGTGGAGCGCTTCCTGTCTGAAGGCCCTCGACGGCTTCCTCATGATTCTCTCTCAGGATGGAGACGTCGTTTACGCTTCAGAAACCGTCAGCAAGTGTCTGGGGATTCCCcagATCGATCTTTCAGGACAGAGTGTGTTTGATTTCACTCACCCCTGTGACCATGAAGAGATCAGAGAGATGCTGGTTAACAGaacaggtTCCTGTAAGAAAACGAGAGATGAGCAGAGTTGCTTGTTGCGCATGAAGTGCACTCTGACCAGCAGGGGGCGCACCGTCAACCTCAGATCTGCTACGTGGAAGGTTCTACACTGTTCCGGTCACATCCGCGTGGAGTGCACGCAGAACAGCGTGTGTGAAGAGAGCGGTACGACGGTGTCATACCTGGTGCTGATCTGTGAACCGATCCCACATCCAGCCAGCATCGAGGTTCTTCTAGACTCCAGAACGTTCCTGAGCAAACACACGCTGGACATGCGCTTCTCCTACTGCGACGAACGgatcaCACAGTTGTTGGGGTATGACCCTGAGGATCTCCTTCAGTGTTCTGTGTACGAGTTTTATCACGCTCTGGACTCGGACAGtctcacaaaaacacaccacaacTtgtttgtgaaGGGCCAGGCATGTACAGGTCAGTACCGTATGCTGGTGAAGGGCGGAGGCTTTGTGTGGGTCGAGACTCAGGCCACCGTcatttacaacaacaaaaactctCAACCGCAGTGTGTCATCTGCCTCAACTAcgtcctcagCGGTGTTGAAGAACCCGAgctcgttctctctctccatcagtcAGCGATAAAGCAGGAGAAGGAGGACGGGTGCgggacggagagagagacacagagccaGGAAGCAGTGACTCGGATAAACGAGGACaggaaagaggagaagagagagggagaaacagagtTACAGGCTGACGCTGACGTCACACTGGACTTCACGAACACAGGGACAGAAACGTCAGTGCTCAAGGACGCTCCTCTCTACAACGACGTCATGCTGCCCTCCACCAGCGTCCTGTCACCTCTGTCTCCGCCCACCGAACCACCCTGCGCCACCCTGCCCCGGCTGGACGACCTCCCCTTCCCATCATCCTCTGCTCCGAACTCGTCCGGTCGCGGTTCCACTCAGGCGGTGGAGGATCTGGAGTTGGAGATGTTAGCTCCCTACATCTCCATGGATAATGATTATCAGCTCcacacgcatgcacacgcaGAGGGTTCAGAGTATCCTCACTCCGGCCAGAAAAACACCAGAAAGCACACAGATCCCAGCGGTACACAGCACAGAGAACAGCCGGATGAAGATCTGTCTTCCGCAAGTCGGTCGAGCCAAAAGAGAAAATTTGAAACGATTTCTCTGCGTCATGCCACAGGgctgGTGGTAACAGACTCACCTCAGGTCAAGAGGTCAAAGGTGACGGTGTCAGAGGCTCGTCCACCAGCCGCCATGCCAGAGACTCTGACTATACTGCTGCTCCCCTCAGACGTGTTAAACCAATTAGTGGTAGGAGGAGCCATCATTAAGCCCCTCCCACACATCACTCTAGGATGTGAAGTTGACGCACCTGTCACTGCGCGGAGAAACCTGCTGCAGGGGGGCGGGAGGAGCTTCGGCACGCACCGCACTGAACCTGcaaaagatttttaatatttaatatatttcatcattttagaGATTTTATACTTTGTCTAATtatatgttattaaatgttactttttattaaatgttacttttactttcctatattttatattattttaaggcatttttgtttaaaccaAAGTGCTCGTTATAGATAATTATAAAACTCATGACTcgttgttttaattttttaactttattagcTATATTTCAACATACAGTCAAATCCATACATGGATACAAGAACCATTCATCTCCTCATACatgaaattatttgaaataagtaattttttaaaaaatatttagattCAAATTTCAATATGTAGAAATTCAAGTGAACAACTGTGATGTGGTGAGATTTTTCGTGTGATTTACGCTAAAGCTAAATCTGCCTCTAACCCCGCCTCTAAACCTACCTCAACCGCTCACTCCTCCTCTAACCAGGCACGAGACGACACGAGACGTATCCCGATACAGGCTTCACGAGACGATAGTGACgcaaatacagtataaaatttTAACGTGTTTATTTTGTAACGACATTAAATCGAATCGCTGTGATATCAGTACATTGTATTGAAggaaaagtagatcaggatttataatataaggtgtaattttcccctattattaacattattttaatattttcagtgccataaatgtatttcatggcaATGTTCCTAATATGGAAAGATGGTTGGACAAGATTAGTTTGTGccttaaatgatgaaatatgaatcaaaaataaaaaagcagtttaATTGTACTGATGAGAAAATAAGAGTGATGTTAGTTTCCTCATCTCACCAAAATGAATTTCTGGTTGCGCCCGCACGTCGTGCTTCTGAATCGTTTCAGACgcgagtgtgacttacatcaagcgcAGCTCACAGGTCGTTGCTTTTAACCTGCGTTTCAGACCACGTTCAAGCCAGCCGTGTCAGAAACCGGGGTGCACATATATACGGTTTACGGTAACTACCTTCGGATGGCTACGCTACAGATCCGCTGTGAATCCTGGACAGTGTGAAAAcgttaaaatattattttttccaagttCACGCGGGTCGAATGAAACGGGGCTGCGAGCCTTGTGTTTGTCACACGTGCCGGAAAGCTTCCTTCGgattagtttcattttttgggCTATCGAGAAGGCAGGCTTCGAGACAGAAATATCGCAGTCCACATCAAAGAAGCAAAATTCGTCTCGCCAGTATTTTGTATCGTGAAATTCTCTCATGCCTACCTCGAACACTAACCCCGCCTCTAATCCTAACCATAACCCTGCCTCTAATCCTAACCATAACCCCACCTCTAATCCTAACCATAACCCCGCCTCTAATCCTAACCATAACCCCGCCTCTAATCCTAACCTAACCCCGCCTCTAATCCTAACCATAACCCGCCTCTAATCCTAACCATAACCCCGCCTCTAATCCTAACCATAACCCCACCTCTAATCCTAACCATAACCCCGCCTCTAATTTTAACACTAACCCCGACTCTaatcctaacactaaccccGCCTCTAATCCTAACACTAAACCCGCCTCTAATCCTAACACTAACCCGCCTCTAATCCTAACACTAAACCCACCTCTaatcctaacactaaccccGCCTCTAATCCTAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67471 lncRNA downstream 794 33303570 ~ 33305518 (-) True G57292
TU67469 lncRNA downstream 7999 33296819 ~ 33298313 (-) True G57290
TU67449 lncRNA downstream 48520 33257229 ~ 33257792 (-) True G57275
TU67441 lncRNA downstream 70600 33234666 ~ 33235712 (-) True G57267
TU67378 lncRNA downstream 237627 33067534 ~ 33068685 (-) True G57215
TU67475 lncRNA upstream 4417 33326080 ~ 33360691 (-) True G57294
TU67481 lncRNA upstream 41941 33363604 ~ 33364547 (-) True G57300
TU67483 lncRNA upstream 43394 33365057 ~ 33410771 (-) True G57302
TU67396 lncRNA upstream 48197 33369860 ~ 33375501 (-) True G57224
TU67405 lncRNA upstream 49112 33370775 ~ 33406126 (-) True G57232
XM_026939447.2 mRNA downstream 12969 33286801 ~ 33293343 (-) True LOC113542112
XM_026939055.2 mRNA downstream 202069 33095656 ~ 33104243 (-) True osr1
XM_034302726.1 mRNA downstream 204019 33095656 ~ 33102293 (-) False osr1
XM_026939056.2 mRNA downstream 437957 32865245 ~ 32868355 (-) True rdh14a
XM_026939072.2 mRNA downstream 541968 32759671 ~ 32764344 (-) False mtres1
XM_034301269.1 mRNA upstream 7342 33329005 ~ 33336795 (-) True prkcha
XM_034302705.1 mRNA upstream 15740 33337403 ~ 33344836 (-) True slc38a6
XM_026939307.2 mRNA upstream 35367 33357030 ~ 33361865 (-) True dhrs7
XM_034301294.1 mRNA upstream 63451 33385114 ~ 33387819 (-) False six1a
XM_026939310.2 mRNA upstream 63451 33385114 ~ 33387819 (-) True six1a
TU67373 other downstream 206740 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 577571 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 644750 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 917168 32374336 ~ 32389144 (-) False ndufaf1
TU67383 other upstream 18559 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 102006 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 133559 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 208264 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 243873 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile