RNA id: XM_026939218.2


Basic Information

Item Value
RNA id XM_026939218.2
length 7103
RNA type mRNA
GC content 0.43
exon number 37
gene id c3h20orf194
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19787744 ~ 19807623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGGCTGTTGACTATGGAGATGTGCGCgagctgaaaaaaagaagaaaaataaataaataacggcAATTTCAGTAACAAGTCTGACtttctaatataaatattgCGAATATGTCTGGCATAAATAAGACGAATGGAAGGTCTTCTTTTGTCGGTCCGCCAGTAAGCTGTTCACGCTTACGGCAAGTTCAGGCTCTCCTGAAAGCTGATGGCGAAACAGTTCCAGATGGCATCCTCTGCTCACTGGGTATCGACAGCCGTTATAATGAGGGCTGTAGTGAGTTGGCCAGCTACCTTTTCTTTGGTCTCTATCAACACAGCCAGAAGCAGCTCTGTGAGGACTTTCCTGAGGAGGTGCTGGATGATGTGATCCTTCTCATAAAGGCAGAGAGTGTGCACCTCTATTGTAACCCTGTGAATTATAGCTACTTGCTTCCTTACATTTCCCACTGGAGGAATCTGCACCTGCACTGCATGACTGAGGCAGAGTACGAGGATGAGGAAGCCGCAGAAGAGTTTAAAATCTCCAGTTTTGTGGCTATGGTTGAAGACTGCAGTTGCATTGGAATACCCTACAGCTCTCAAAGTCATGTGCAGAAGTTTGATATGTTCATGTTAGAGAAGTGGCCCATTATTCAAGCATTTGCTCTGGAAGGAATAGGAGCTGGTGGTTTTTTCACCATGAAATACAAGCTGACTGATATGAGTGAGAGTCTTTGGGAGATTTATGCAAGACTAGACCCGGTGTCTTTGGACTATCTGCTCAGTGAGGATTTGCTGTTGTTTGAGAAGCAGTGGAGCTGCTTGTTAACCAGTGTGAACACAGAGAGCCCACTGTCCATGCAGGAGATGTCAGAGGCTCAGACTGCAGAGCCATTCAGAACATATTACTCCCATGGTCTCATATCAAGTAATATCACAGATAAAAGCCGACAGCCATATGTGCTGTTTGGGAGTCACTCCTCCAAAGATGACCTGGAAAACTATTGCTTCACCTTCCCCTCTGAGGGCCACCAGGTCCGCAACACTGGACCTTATGGGAGTGCTGCAAAACACATGCTGCTTCAGTGCGTGGCTCCTAAAGGCCCACTGACCTGTGCAAGAACATATTTCTTTGGCAGTACTCATGTCCCATACCTGGGGAATGATAATAGCACCGCACAGAAGTCATCAGAAGTCATGCTGCTTACACAGATCTACACAGCTGCTGTTCAGTCAGTGCTGgcaggaataaaatgcttctcCATCAACTCTAGCGCTAGCAAGGCAAAGGATGTAGCAGAGCAAACATTTCATTTGGCTTTGGAAACCTTTGGGATGCTTCAATACAGGAGTGCTCTCAgGTCTAAAGCAGTATTCAGCATCGAAGCTGTGAACAATGCAGGCAGAGTTATACCCCTCAGTGATGAGCACAGTCGCTTTCTGGTCAAAACTGCCTCCATGGTAGTGTATGATATTCCAGATCTCCAGTGGGGGGGAGGGGACCTGGGCTCTGTAGTCTTCTCTGAGTCTTTCCTGGAGTCTAGCATCTACATTCAGCAGAGGGATGGAGCGCTTGCATCAAACAGCTTTTTCACTCTGCTTACCTCTTCAGTCCCTCGCTACATCTCCTGGATGGTGGATGATTCTGATGTGAGATTGTCTGAGCAAGCTCTGCATTTTTTGAaggaGGAGAATGGAACATGTTTAGGGGTTCCTCTAACAACAAAACACTCAGCACAGGTGTTCTCTAACAGTTTACTTTCTACACCTGAAGAAGGGAAGGTGGTGTTTTTCTCAGAGGGTATATTGATTGTCCATCCACATTATGGTATCATCACTATGTCCAAGAATCATATCAGAAACATCATAATTTATGATGGGGACTCTTTCTCTGCTGTTACCATGCTGTTTATTGAGTATGAGTCCTCTCTGCGTCCACATCTTCCTTTTCCTCTACACAGCGCTGACTCTTGTCTGGCCATCTCTCTGATGCCCAAAACCAAGGGTTACAAACACTTTTACTCACAGGTCCTGCAGGTTTGGAGTAAGCCTGATTCAAAGCTCCATGTGCAGCATGTTGCCCAAGACCAGCTGGGTCTGGAACAGATGAGCATGTACTCCAGATTGCTGAAGTTCCATGAGGTACATGGTTCATCTGCAGTAAATACCAGAGCAACCCAGAAGACTGCTTATCCAGACCTGCCAGATATGGACAGGTTTCTGAAGCACTTTGCTATCAGTAGTAGCATCTGTGAGGAGTCTGTGTACAGTGAACACCTAGCTGCACTattcccaaacacacaccccaaaacAGCTGCTCCTGAGTCAGAGCAAAAGGTGGTCCTTTCAATCATCACAGGCTTACCAGGCAGCTGTAAAGAaagtttgtgtgattttttggTGGATGTGAATCAGGAATGTGGCAGGTGGGAGGTATACCGCCCTGACCTGGACTCAAAAGATCTATGTGTGCCACATCTCCAGCGGTTCCTGAGTGGCCTTGTGGCCAAAACAAGTGAGACATATTTAAATACCCCAAGAGTGCTGCTGCTGACATCAGGGTACACAGACGTGTTGGATATGGTTCAAGCTGTCATATGTCATCCAGACCCACAGGTccagagcagagtgtgtgtgggtgctgTCACAGCCTGTGTCAACCCACTAACATCTTTTATGGAACACAGGCTGCTCTTCCCCAAACTCCTGGAGCAGTGCAGTCAGGGGGtagtgagtaatgtggtgtttaCGGGTTTGACTGCTGAGCAGAAGCACCCTCTGCTGAAATACATGCAGCAGCTCATTCGTTCAGCGAATCCCAATGCAGCATTTATCCTAGCCGAGAGAGGAGCTGTGACCAGAACGGAGGATATGCGGCTGATTCTGAGTGACAGCAGTTTTTGTGAGTCTCAGATGATCAGAGCCAGATATCTGCTCTACCCTGGCTGGTGGGAGGGCAGGTTTGTGTCTGGTTGTGGATCTGTATCAATGTCCCAACACTGCATACAGTTCAACCGCCCACTAGAAAGATCCTTATTTCTGCATTGCTGCAaagGATTAAAGTCATCCCTCAGAGGCAGCCCTTTTACAGGAAACATCTATCACATCAGTGGGAAAGTGCTCTTCTCTGACAGTGACAAGTTGTGGAACGTGAGCTGTAACTCAATCAGTGGGAGTGTGACTGTGGCCCTTGATCAGGTCTCAACCCGTAGCCCCCAAATCACGCAAACTTGTTACCTGCTGATCCATGGGGTAGGACTCACCCAGAACGGCATGAGGGACTGGCTCAGACAGTGTGCTAAACAGAAAGTACCAAAGAAAGCAAAGAAGACTAGAAGTACTCTTACACCACAGGAAATCAGAAATATCCATATGAAGAGGCACCTGGAACCGCTTCCTTCTGGTTACTTCTATAATGGCCATCAGTTTGTCAGTTTCTTTGGAGAGAAGCAGAACTTCCATCCTTTAATGGACCAGTTTGTAGAGGAATATCTGCAGGAGGCCAATAAGGAGATTGAGCGCTTTAACAGTGAGGTGGACCTGTATGCACCCAGGGATCTCTTTGACTAGAGTTCTTCCTCTGTCCTGGTCACACCGGATAGGGCTTCACTCCAGGACCAATGATGTCTGCAATCATCTGTTCCCTATACTGTCCACACAATGTTAAGGGGATAACTAAGTCACTAAAATGGGAGGGGTTGGCCACTTCATAAATTCCCACCATAAATTCAGGGAAAACCACTGCAGTGTAGATGATGAGAGATTTTCACCCATCTCACTACCACTCTGTACTATTTCCTGAGAGCCATTCCTTCTGTGAATAGCACATTTAGCATATAATGGGAAGAAACAGAGTGCATGTTAAGATGTGGCATGAGttcatatatattaaaatagtaataaaagtcTTATGCTACATTCATAATTGTGGCAATATATTATGAAGATCATGTTAACCATCTTGTGATGATGTTGGTGCTCTGATGCCTTTAAATCAAGCCTATCTAATGTATTAATCTGTTCACACACATACCTATAACTCTGCATGTAGGTTTTTATTGCTGGGACATAACAAGTATAACAGATGTAGGTACTCTTCATTTAAATTCTCTCTCCGTAGTAAACCTCAtcataatgtatataatgtgaaTATACTACTAAGGAGGTTGTGTAGATATCACTATAGCTAGAGAGATAAAAGTGCTTAGTCCTAGTTCCACTCTAATTCCGGTACCAGTTACACAAAGAGTAAGTGCTAGGATCATAGCTAAATGCTAATAGAGTTTGTCAGCAGGGGCAAACCTGCACTAACAGGAGATGCCTCAGAAGTCCACATCCAGGGGAGTACAGATGGGGAGACAGATGTGATGGTCCATCAGTCTGTAGACTCCAGCTGTGGAGCTGTGGTGATCATCTCTCATCTAAGGCAGAGCTCAGACAACCAGTGGCATCAGACTGAAGTGGCCAAAAAAGGAAAATTCCACTGGGGTGAGGGTTGGGGGGTTAGGATATGTGGTATGGGAAGGATGGTTATGGAAGGGGCAATGGTCACAGAGTTTGATGGGAATCTGAGTTTTCAGTTGAGTGGGAGGTTGGGCTGTAGAATTAATTTGTGATGTGGAGCAACATGGTAGAGCCTTTTCTTAATGTGGGATGAATGCTTTCTTGTGAAGCCTATTTTCCAATTAATGTGTGTAGGGGGTTGTGGAGAGTCATATATTAACTTTCTTTGACTCAATTATGGTTAATGCGTGTTTATTAGAGCCTGTAGCGGTGAATCTAATGTGTCATGTTGTTTGCAGGCAGATTTAGCTCTTCACCTGGGGTCACTCCTCTATGCATGCTTACTCAAACTAAATGTGCACAGCAGGGGAGAAGCAGTGTCATTCTCAAACATGCATTCTGATATTTGACCTTGCATCTATAAGACGAGTATTAAAGAAGCCAAAAGTATAGCGCATCTAACGtgaatgaaatgttaaatattatatgAAAGAAATGTTTGCTGTGAAATGGGGTGAGGAtgcacttgcaaaaaaaaattcagacactGCTGCTCCTCTCTGTGCTGCAAGAATAAAAGGTATAGTAATGGAATTCTATATACGAAGTGTTAGCACTCTGTATGCGCTCTCACCATATCCAGTATAAGAGTATATAACAGTTGCTGTGGTCATTGATATGCTCGAGAGGTGTGTTACTGTTGCTGTTGCTATGGAGATTTACAATACAGCACACTTGCCACTATCACCATGGAGACTTACCACTTCGTACCTTTTTAGCAATCAATCGCAGTTTGCCTCAAGATATCACACTTGTCTTAGCATAAACTCTGTAAGTACAGGTTATTGTGAGGCTGTGTGTCCACTGTGCAGTAAAAGGTGAAGTCAGACCAGCTCACACCAGGCTGACTGACAGAGCTTTTTCACTGAGCAGTTCCTCTGCGAGTTAGACAATTTTTGCAGCATCTcagacacacagagcagctgttcTGGGGCTATGGGGCTCCATAATGCTTCTGTAATCTGTAGTTCAGGGTAGCAGTCATTTTAGCACATACTACGTGCATGTGTTAATATGTCTTACTgaggtatatttatatttataacacaAATGCCTTTCACCAAACTGGtactacagagagaaaaaaactattttgcaTACCTAAAGAGAATTGAATTACctagagaggaaaaaagtgtatttttgtaaggctgtttatttaaaatgcaaaaaaaaactgattaaattaGGGGTATGTTTCACTCCTGTAACTTATTTCAGAGGCTTCCTATTAGGCTGACTGAAGTGCCTTGGCCAAGAGGAACAGGCACATTGCCAGGCAGAGTTGAGCACCAGTATTGGTGAAAGGATAAGCAGagtgtttttcttatttgtgAAGGGTCGGATGCTGGCAGGCAAGAGGGCACTGGAGGGCAGCAGagcaaaattttaaacaaagacaCATCAGTGTCAGGGCAAAGCCTAAGCCTGGATTAAGTGGACTGGGTGTTCTTTTAAAGACATCTTATTTAACAGttgcatgaatgaatgcaaaTTTGGCAGCGGGTAAGTCTTTAGTTTGCTTTTGGAGACAGACCCCAGTGAGGCCCTCCAGGCTGTCCCTATAACTGCCTGCGAGGTCTTCCCTGACCACTGTACCTGTGTAGCTGAGGTTAGAGGACTAAAACGGAGTTTGGTGTCAAAGAAAGAATTAGCCTTTTATATGTGAAAAATTGTTATGATTAGCTGAAGGGTCGCATCAGTGTTCCGAGAGGCCATTCCTTAAActgaactttaaaaaataaataaataaataaaactataattgTCGGTTGCCTTGGCTTTGGCCTCTGTTGGAACAATAATATTATTCAGCAATATCTTAAACTTGCTGTAAGTGCTGAGGGCTTGTTCCTGACCAAACCATCTCACTCCCATCTGTTAACCTCTCTTTGAAATCTGTTCATTCCTAAAATCAGCAGGGTTAATCAGAGACTGCTCCTGCTGAAGTTTTCTTTCTTATGTTCCCAGGTACTGGATCATATTGGCTGTACCAACATATAAGAATTTCCCATCACAGATGACAGAGACTTAATTGCACTTGTTATGCTAATCAGGTTACACTTGGTGGTGAGAGGAGCTTATTTGGAATACAGAAACTTAAGGGCTAATTTACACTGCTCAAGATGTTTGGTAGGGAACAAGCCTAAAGTAAAGAATTCCAGACCTAAAATAAGAATAGTCAGTATGTTATTGCCTGCACAAAGAACACATTCCTATTCCGTCCGGACTGTGGACAAAGTAAGTTATTTCTGAACCTTTTTAGTTCCAGAGAGAAGATAAAGGAAAAGGGGTGATAGATTCCTAAGGTTTTACCTCAGGATACCCAATGTTTGGAGTTCATACTGATATTTGTGGTGAAAATGGTTCAAACAGTTGTACTTGAAAAGTGCCAAAATGTTAGAGATTCACTAAAGTGTGTGAAAGTTCAAATAATTGAGTTGTGTTTGCACAAAACTACTGAAACTCCTGTTTTCTCCTGTGACTTATGCTTTTTATAATCtatatgttatatttatgaGATTAAGTAATCCATTAAACTATTTATAACCCACTTAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58494 lncRNA downstream 36390 19747694 ~ 19751354 (-) False slc4a11
TU58495 lncRNA downstream 72324 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA downstream 72324 19714418 ~ 19715420 (-) False G49484
TU58488 lncRNA downstream 98867 19688592 ~ 19688877 (-) True G49481
TU58214 lncRNA downstream 359019 19427746 ~ 19428725 (-) True G49232
TU58636 lncRNA upstream 88075 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA upstream 150821 19958444 ~ 19964311 (-) True G49584
TU58693 lncRNA upstream 213064 20020687 ~ 20025664 (-) True G49606
TU58688 lncRNA upstream 256633 20064256 ~ 20064511 (-) True G49605
TU58757 lncRNA upstream 373455 20181078 ~ 20184289 (-) True G49661
XM_026943527.2 mRNA downstream 19610 19716600 ~ 19768134 (-) False slc4a11
XM_026943495.2 mRNA downstream 19610 19716600 ~ 19768134 (-) False slc4a11
XM_026943511.2 mRNA downstream 19611 19716600 ~ 19768133 (-) False slc4a11
XM_026943503.2 mRNA downstream 24271 19716600 ~ 19763473 (-) False slc4a11
XM_026943535.2 mRNA downstream 24274 19716600 ~ 19763470 (-) False slc4a11
XM_026943999.2 mRNA upstream 2512 19810135 ~ 19813866 (-) True cfd
XM_026933670.2 mRNA upstream 34104 19841727 ~ 19844357 (-) True foxi2
XM_026936642.2 mRNA upstream 189246 19996869 ~ 20032845 (-) False letm1
XM_026936636.2 mRNA upstream 189246 19996869 ~ 20032845 (-) True letm1
XM_026937620.2 mRNA upstream 259079 20066702 ~ 20110665 (-) True kiaa1109
XR_004577815.1 other downstream 120083 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 468011 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1174343 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2126360 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2213322 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 550311 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 550365 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 550365 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1804151 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 2088561 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile