RNA id: XM_026939221.2


Basic Information

Item Value
RNA id XM_026939221.2
length 4608
RNA type mRNA
GC content 0.38
exon number 8
gene id elovl5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26687125 ~ 26706755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGTGATGTAGTAGACTTTGTCCTATCAGGCTATTGTGAGGCGTTAAACCTGTCCCGTTATCACACGCATCCCGCTTCCtccactcttcctctctctctctctctctctctctctctcacacacacacacacacacacagatactcactctctctcagactGAAACAGCAGGAGCTGGGACCCAAGGACGTCCGTCCACAAGGAGGCTAGAAATGGAAAGTTTGAACTACAGGCTGAACAAACATATTGACTCATGGATGGGTCCCAGGGATCCTCGTGTGAGAGGCTGGCTACTGCTGGACAACTACCTGCCCACTCTGGCCTTCACTATCATCTACCTCCTGATCGTGTGGATGGGACCAAAGTACATGAGGAACAGACAGCCTTTCTCCTGCCGGGGAATCTTAGTGGTGTATAATCTGGCACTcacctttctttccttttacaTGTTTTATGAGCTTGTGACTGCTGTGTGGCAAGGCGGCTATAATTTCTTCTGCCAAGACACTCACAGCGGAGGAGAGGCTGACGACAGGATTATTCACGTGCTGTGGTGGTACTACTTCTCCAAGCTCATTGAGTTTATGGATACCTTCTTCTTCATCGTGCGCAAAAACAACCACCAGATCACATTCCTGCACATCTACCACCATGCCACCATGCTGAACATCTGGTGGTTCGTCATGAACTGGGTGCCATGTGGACACTCCTATTTTGGGGCCTCCTTTAACAGCTTCATCCATGTGCTGATGTACTCTTATTACGGGCTCTCAGCTATTCCTGCCATAAGGCCGTACCTCTGGTGGAAGAAGTATATAACACAAGGACAGCTGATCCAGTTCGTCCTGACCATGATCCAGACATCCTGTGCTGTGGTGTGGCCCTGCGGTTTCCCAATGGGCTGGCTGTATTTCCAGATCAGTTATATGATCACccttattattttcttcttaaactTCTACATACAGACTTATAAGAAGCCCGGGGCTGCGCTGAAAAAGGATCAGCGACACAACGTCGTTAAATCTGTGAACGGCCACTCGAACGGTGCGACTCACACAGAAACAGTAAAGCACAGGAAGAGGGCAGATTGAGGAGCTGTCCATTCACCCAGTTCCTCTATATCTGCGTAACACTTCTGTGAATGTGTTGAAAGACTTCCCCAGTCTacacactgcagagagagagaagcaaaataaaagcaaatccATATTAATCTTGAAGAGAGTCATAACATTTTGCACACTGTGTCCTGTTATTGTTCCTATTGAATTCAAAGACAATACGAGGAGAAACAcactgtagtttaaaaaaaaaaagttataacaGGGTCTGAGTTCTGTAGAATGTCTTAGAGTATATTAATGTCTTGTATGTGTgacggcctgggaaaacccatcggatATTGTCAGTGCGGCTGAATTCTTCAGAACggctactttaagaaaacataaatatatttcacccaAAAGTTTTGTAGAAATATTTTGATTTACTTTCTAACCTTTCCTTGGCTTTCTGCAAACATCATGTTAGGTTGACAAGGAtccagtttaacaaacgcaACTGTAAaagcagtcagtctgcctaaagagcgctagcttgctagctaaatgtGCTTTCTTTGGCCAGGGAACgtcatgctttgatcaaatTGTTGGTTATTTGCCATAGAGAATTGGACGTAAGCCAAATAGATTCTATTTCCTTCATCAATTTTCACTAAAGTTATTTTCTTCATTAACAAGTTACACATGTATATATCAGCATAGTGTTTGTTTACGCCTGTCAGCTCAGGATAATATTAAATCAGGTTAAAGATCATTGCAAATGAGATAATATAGACATGACAACAGGATAATATTAAATCAGGTTTAAGATCAATATAAATGAGATCATATAGAGATGACAACAGAGTAACTGAACACTGGACATCTAGTccatactgtaaatataatgaattctAATAATCTATAACagttaccttttttttaataaagtataaGATATTAAACATGGAATGACAGCTGGATGGACGAGACTTCAGAATAGCCTGTTAGTCTGTAGGCTATGAAAGACAGGAATAAGGTTAGACTTAGGTTTTATggtcatgttcattattttaatcttttactgatcaaatatatatttcatgtgTGAATTAAATCAGTTAATAGCAGTTGCTTTTACACAaccagtgtgtttgtgttgcctGTCAGTAAAATCAGAACAGAATCTTTAAAACCTCCATATTTGTTGGTAACCAAATTGTAAAACGTCATAACTatacttgtggttgagatacatgcaaaagagaaacatgttTCAGAACTACGTGTAGTACAGATTTGAAAAAATctccatgtgaagggttttccacGGCCGCCACACATATTTTTATGATTGTTTTAATGGATgagactgttttgaacacaaaatggaaatgtgcttatacaaaaaaaaagctataattTGGAAAATTGATAGATGATAATATTTAGAAAAGGGTACACAGAAGCGATAATTGCAATGTTTTGCAATGGGGTccaaaagtttttcttttttattacttttattaatttagaaaatgtaataatttgatCACTTAATTCTATTATCATCAGTAACATGAgttcaaaatatttacatgaatttcatgtaattttattatttcccCAGTGCatttgagctggcatggactccactagttTGTAAAACCTGACGATTCATATTATATCGAATCCATTGCAGTGTCCTCTGAACATGTTTAATGGAATGGATAAGACTCAAAGAAAACTTGATTTGTGGAAAGCCATtaacaaatttgcttacattttaaataggaacctagaaatagtgcagcatcttgaatattaaatagttCTTAAACTTTCTGTGTATTttagtgtggtctcagacttttggaccccactgtatatgcAATACTTTGTAAGGATATTGTGATTTTTAAGCACATAAAATATGCTGTATGAATATTACAGCCATATAACTCACTGTCAGATGCAAAACCATCAGGTCTAAATATAGCTAATATTGTTTTATCATGTCTTGCATTGAGAAACATAGGACTTTTATGATACATGCTGGTGCTTCACGTTTAAATCAGCGGCTTACGAGATACATGACCATTCATTCTTTTGTATAGTGATGCTCAGCTATCCAATATCATTCCAGCCAAACACCTGAGACAAAACCGTCTAAATAAGCAATGTCACTTGAACATAGATTAGATTAAACCTCGCTGGCGTCCATTTGAATTGCGAGATATTCGATATTTTATTTGGACTTGCAGTGGTCTGAGAGTCTTAGTGATCCAAGATTCATTAGGCAGTCCATGAATCACAGAATCAACTATATAGTCtgttagaaataaaatgtccaTCATACAGATTAACTAACGATTTCTAATGGAATAGCGActgatttatttgaataaagtaataatatttGGTTCACATGATGATTTTGTTTAGCACTGTCTGAACTACGTGGGCATCAATTAGTACAGCttctagaaaaataataatgaagaaagagagaaacagttcCTAAACCTCGAACATAAGCATCATTAAGCATCGTGATACGGTATGTTACTATAAATTGtgccataaaatataaaacagtctATTCCATTTATGCGCATAACTCTAATCAAATCAATTAGTCTGTTTAGAAGTCTAGGCTTGTGCACCATTTGCACTAAccgaccactttattaggaacgccCGTAGATCTGCTTATTCATGATTCATGTAGTTgtcaaatcagccaatcatgtggcagcagcacaacattgatcaagagcttcagttaattccTGGTCTTGGCTGAGTGTTGTGCAttcggagatgcttttctgctcaccatggttgtaacgAGTGGTTACTGAGTTACCATAaacttcttgtcagctcaaaccagtcttgCCATTCTGCCCTGACCTCTGTCATTAAAAAGCTGTTTCTactctggatgtttttgtttttcgcaccattctgcgtaaaatctagagactgttgtacgTGACAGATCCAACACCCGTGGCAAGGCACGGTCAAGTCATCACATTTTCCCACATtctaatgtttaatgtgaacaataTCTGAAACTCTTGACTTgcatgtgcatgattttatgcattgtgctgctgccacttgaATGGTTAATTGGCTAACTGCATGAacaagcaggtgtacaggtgttcctaataaagtggtcagtgagtgtatttcagTGACTGTAACTGTACACTTTAAACTATAATACATGTACCACTACCTGTAGCTATACTGTCTCTCTGAACATTGCCTTAAAAACATAATGCAACCTTGCTAGCATTTTCAACTAGCGTCTCCTCTGTGTGTATTCTATGTGATGTTTTACATGACATAGAGTTCATTATTGTAACACTATGTATAGTGACAAGACATTGCTTTAGATGATCTAAGCTCTTAATTGTTCGAAGATCATGTGTTGTTGTAACAATTTTCAAATCGTCATGCAGGAAAATGCATAAAAGCTACGGTAGAAACTGTGTTGTTATTgtgagtgaaataaataaaggccTTAGTGTTTACCCTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10244 ELOVL5; elongation of very long chain fatty acids protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62877 lncRNA downstream 18304 26668613 ~ 26668821 (-) True G53210
TU62849 lncRNA downstream 139616 26547296 ~ 26547509 (-) True G53183
TU62848 lncRNA downstream 143903 26542964 ~ 26543222 (-) True G53182
TU62847 lncRNA downstream 147329 26539529 ~ 26539796 (-) True G53181
TU62845 lncRNA downstream 151831 26535083 ~ 26535294 (-) True G53179
TU62871 lncRNA upstream 947 26707702 ~ 26708397 (-) True G53204
TU62883 lncRNA upstream 13321 26720076 ~ 26720660 (-) True G53216
XR_003404260.2 lncRNA upstream 31788 26738543 ~ 26741519 (-) True LOC113542110
TU62919 lncRNA upstream 91924 26798679 ~ 26799518 (-) False G53250
TU62918 lncRNA upstream 91973 26798728 ~ 26799608 (-) True G53250
XM_026939345.2 mRNA downstream 19107 26640928 ~ 26668018 (-) False arfgef3
XM_026939344.2 mRNA downstream 19456 26639549 ~ 26667669 (-) True arfgef3
XM_026939462.1 mRNA downstream 57247 26629250 ~ 26629878 (-) True lhb
XM_026939066.2 mRNA downstream 66139 26529006 ~ 26620986 (-) True plpp4
XM_026939275.2 mRNA downstream 219744 26366178 ~ 26467381 (-) True wdr11
XM_026939535.2 mRNA upstream 1764 26708519 ~ 26719590 (-) True gclc
XM_026939068.2 mRNA upstream 14064 26720819 ~ 26725438 (-) True klhl31
XM_026939386.2 mRNA upstream 252349 26959104 ~ 26969207 (-) True bmp5
XM_026939531.2 mRNA upstream 268970 26975725 ~ 27025885 (-) False col21a1
XM_026939530.2 mRNA upstream 268970 26975725 ~ 27025885 (-) True col21a1
XR_003404274.1 other downstream 777006 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1951238 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2035278 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2035278 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2647025 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 831021 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1726465 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2495177 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2972656 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3405076 30111831 ~ 30122655 (-) True G55209

Expression Profile