RNA id: XM_026939225.2


Basic Information

Item Value
RNA id XM_026939225.2
length 2318
RNA type mRNA
GC content 0.46
exon number 8
gene id agpat5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27548265 ~ 27560020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGCGCGATACTAGTGAGTAGCTGACGTCACCGGGTGCAATATGGGGTCCGTGCTGCGAGTGTAGCGTGACTTTGGTAAAGAGAGAGTAGAGGAGTAGAtttataagattttttaaatctaatttgcGTCTCTGGGTTCTGAGTTTGAGTATATCGACCTCTAAAGGGGCGCACACTGGTGTTATTTAGACACCTTGCCATTTTAGTCTGGAGCTCAACTCCgtagcattaacattagccTCACCTTTGACAGACCGCCGTAGAACCCGTAGTGTGAGTTTATACAGGATTTTACGGTAACCACCAAGCGACTGGGGAGAATTACAGAACTGAGATTCTCATTGGTTTGTATGGTGTATTTGCATTAAAACTGGTTGTTATCGTTGATCAAACTTGGAAACAAGCATTCTGTTCTATTCTTCTCATGTGTAGTGATTAATAAGGAAGTGTGCGAGTAAACTTTTCTACCGTCGATTAAATCAAACGCCTTGTGGTTACCGTAAAGCCTGGTGTATAGTCGCACTGCCGCGGTTTTGACAGGCGCATGCCTCTGCATTGAGCGTCTGTCTGGCAAGTACACTTTGTCATGTGTCCGTCAGGGCTTTGAGGGTTTATTGTATTTTagcaatatatttttatattctgcACAATGACAGGGTTAAGCTGAAACTTTTGTACATTTCAGAACAGCTTAGCCAAAGTGGTGTAGCAGCTGCCAGATCTCGCTTCCGCACACTGTGTAAAGCCCCCGAGCGCCTTTTCAAACGACGTGTTAAGTTGATTACGAGTAgtatttttctgtgtgtgtgtgtatgcgccaTATTAACCATGCTGCTGTCGCTGATCGTGCACACGTACTCTCTGCGCTACTGCATTCCGGCGGCGGTCATGCTCGGCACTGCGCCGGTCTACCTGCTGTCCTGGGGCGCATGGCGAGTCCTCTCCACTGTCCTACCGGCCAGACTGTACCACACCGTGGACGACCACATCTACACCATCTACCAGAGCATGGTCCTGTTCTTCTTCGAAAATTACACTGGGGTTGAGATTATTATTTATGGAGACATACCAAAGAAGAAGGAGAATGTCGTCTATCTCTCCAACCATCAATCCACAGCGGATTGGATCGTTGCTGACATGCTAGCAATTCGCCAAAATGCACTCGGCCATGTAAGATATGTGTTAAAAGATGGTCTGAAATGGCTTCCATTGTACGGCTGGTATTTCTCTCAGcACGGCGGCATATACGTCAAGCGGAGCGCCAAGTTTGATGAAAAGGCCATGAGAAGGAAACTCCGCTCTCAGATGGCTTTAGGAGCACCAACGTATCTTGTCATATTCCCTGAGGGAACGCGCTACAACCCTGAATTTAAGGAAGTGATCAAGGCCAGTCAGGCTTTTGCTGCAAAAGAAGGGCTTTCTGTACTAAAACACATTCTGACGCCAAGAATGAAGGCATCACATGTAGCAATAGAGTCCATGAAGGAGCACCTGGACGCAGTTTACGATGTCACAGTGGCTTACGAAGGCACGCTGACTGCAGACGGGAAAAGACGCTCTGCCCCTTCAATGCCAGAGTTCCTTTGTAAAGAATGCTCCAGGGTGCACATCTACTTTGAGCGGCTGGACATGAGGGAGATTCCTCCAGAGCCAGGCTTTTTCCGCAGGTGGCTTCATGATAGATTTGAGATTAAGGATAAGTTGCTGACTTCCTTCTATGAGTCTGAGGAGCCCAACGAAAAATGCAAGTTTCCAGGagaaggtcaaaggtcagcgcTCAGCCTCAAAAAGACGCTGCCTTCACTGCTGGTGTTGAGCAGCCTCACTTTGCCAGTGCTGTTAACCGAGTCAGGTAGAAAACTCTACGTGAAAACATGGATCTATGGGACTCTTTTGGGATGGCTGTGGGTTCATATACGACCATGAGGTAAAAGAAACCACTGACTTCCTGCCAGCTCGCATCAGCATGAGGAGACTAGTGCTGGTTAGATCCTTGTGTTTTCAGCCAGCCATGCTGTCACATCTTGGAGTGTTCTTTTCTGCCGTGTTAGGGCCGAGAGGTGTTTGCAGGAGGATGACCACCATCTCTCTTTATTCACTGCATCTTTTGTCTCGAAGTCTTTGTTTGGTTTTTACATTCTCAGTGTCATGTCCATTACGTTGGTTATCTTACTATTCTGAGCTGGAAATAAAAGAAGAGCAGAATTTTAAATGGGGTTGACATGCTTATACAAAGGTTggataagatttttttttttattgtgttcagCTTTCCATACAagtattcatattattattaatgccgttggttctgatt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K19007 AGPAT5; lysophosphatidiate acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63458 lncRNA downstream 15307 27530679 ~ 27532958 (-) True G53729
TU63617 lncRNA downstream 180205 27367361 ~ 27368060 (-) True G53862
TU63597 lncRNA downstream 228643 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 233914 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 294313 27226345 ~ 27253952 (-) True G53732
XR_004577818.1 lncRNA upstream 418424 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 432267 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 540353 28100373 ~ 28100589 (-) True G54201
TU63970 lncRNA upstream 546695 28106715 ~ 28175966 (-) False G54204
TU63973 lncRNA upstream 546695 28106715 ~ 28107820 (-) True G54204
XM_026939227.2 mRNA downstream 6934 27537769 ~ 27541331 (-) True zgc:163080
XM_026939512.2 mRNA downstream 22323 27518869 ~ 27525942 (-) True polh
XM_026939457.2 mRNA downstream 43957 27501662 ~ 27504308 (-) True LOC113542117
XM_026939479.2 mRNA downstream 74544 27437145 ~ 27473721 (-) True pcsk2
XM_026939502.2 mRNA downstream 127111 27412030 ~ 27421154 (-) True prokr1b
XM_034302635.1 mRNA upstream 2237 27562257 ~ 27598047 (-) False mcph1
XM_026939280.2 mRNA upstream 2237 27562257 ~ 27597952 (-) False mcph1
XM_026939283.2 mRNA upstream 2237 27562257 ~ 27597644 (-) False mcph1
XM_026939281.2 mRNA upstream 2237 27562257 ~ 27597644 (-) True mcph1
XM_026939279.2 mRNA upstream 2238 27562258 ~ 27597643 (-) False mcph1
TU63465 other downstream 6966 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 1638146 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2812378 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2896418 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2896418 24471703 ~ 24651847 (-) False lyst
TU64047 other upstream 873200 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1641912 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2119391 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2551811 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 2552014 30112034 ~ 30122822 (-) False G55209

Expression Profile