RNA id: XM_034302879.1


Basic Information

Item Value
RNA id XM_034302879.1
length 2420
RNA type mRNA
GC content 0.37
exon number 8
gene id LOC113542008
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7325374 ~ 7338431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGATATAAGCAGTGCATTAGGTGCGCAGGAACTCCACCTCATTGTTCATTTCTTTAGTGGCAGGCTTCTGTCTTGTTTCAGAAGTGGATTGCTGAAATATAGAGCAGCTACAAACCGGAAGAGAGAACATGTCTGGGACTGGTGCGCAAAGTAAAAGTAAAACTGATTCAGCAATGGAGTACGAGATGAACCATAGGAGGCGAGGCTTGGCACTAATCTTCAACCAGGAAAACTTTCAATATTCACGGCAGCGCCGTGGCACAAATAAAGACAGAGACAACCTCACAGAAAGatttcaaGCCTTAGGGTTTGAAGTGAACTCTCACAATGACAAACCTAAGGCAGAGGTGCTAAAAGAATTACATAAAGCTGCAGAAGCCAACCACGCAGATGCCGACTGCTTTGTCTGCATTTTCATGACTCATGGGGAAGAAAGGCAAATTGAAGCCTATGATGATAAGATTAAAATTAAGGACATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATGTGCTGGTAAAAAATATGAAGCTGCTGTGACCGGCATGATGGCAGGGGACagtgatgatgaggaagaggaggaggaagcagCTAACATCTACACCATCCCAGCAGGGGCAGACTTCCTCATGTGTTACTCTGTAGCAGAGGGATTCTATTCATTTCGTGATGTAAATGCTGGATCATTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAGCTCCTGACGCTGGTCAATCTGAAGGTTTCTCGACGTACCGCAGACGTGGGCAATTTtaggaataaaaaacagatgCCCTGCTTCACCTCCATGCTGACTAAAAAAGTCTATTTTAGGTGCAACAAATAGTAAAGCACCCGCTCCCAGTGCATTACTATTTACCATTACTCACTTAATGatcaataaacatttttggtgttattactgttttttttcccctaacatTTTACAAGGATTGTATCAACATAATATATCTATGAGATGATACCTAACAGAATTACAAGACTCAGTCACTAAATCAGTTAGAGCTGcttaatcagatttgagaattcaactgcgCTGACCAGTGTGGTGGTATAAAATGCTAATAATGCACAGTGATTAGATAGACATTTTCCTTAGTTATATTACATTTGACTATTGCAAACCTGTAAATTTAAACATTCATTATGTTATGATCATAGACAAATAAAGTAAATCATTAATGAATGTTGTTCAATAGGTTAAGGATTACAGCTTTCATGTGTCATATGTTTGTGTTGCAAAGCTggctttcattttcactttgtgATAGGGCAAATGTTTTTCTAGGGAATTTTTTCCCAGCCTCAGATTAACATTGACATGCCTTTCTGGTGAAATTCCCTTTAAGAGGTTGTCATTTTCCTGATTTCACTACTGTCTGATAAGATATGATATACAGACTGACACTTCAGCCTTTTTTTCCATAATTTATCATTTGCTGAATATccataatttataatatattcattattttggtATTTATATCCATTCAtcactgaaattaaaattacaagcagtttataaactctaataatcttcataaagctctaataatgtTCTGTAAGTAATTACTTGATAATTTATAATAACATGTCATGCAAGTAGTACTACTAATGCTATATGTGGTAGCGCACAacctgtataaataataatgccctgtgaataattcagtttttttgtatagcacttttgacaatggacactgtcacaaagcagctttacagaaatatatactctctatatgtgtatatatatatatatttaccaaaacactctatgcccatgacCCCTCCAGATCTGAACCTTTAGCTAAGAAAAAAtctattaacaaaaggcttgcCTAAACAGacatgttttcagcctagactttcAGACCATGAGACTCAAACACCTGTCTGAGTCCCAAACattaattggaaggctgttcctttctgccccctgctgcagacttcattaaaatattcctgtaccttttgatcaaagtaggtgTGGCTGATCACAAAAGGCCagaagttcgctcaggtactgctTTGCATGACCATTCAGTGCAGTTATAGCACTTTATTAGAGCTTTATGAAGCATGATTAAAGtttataaaatgcttaaaattataaGCACACATAATAATTTATGAACATAAGTTTCATAGAAGGTGTTATGACTTACTCTATAAGGTACCATAACTATGTGGtttgaattatttttctgtaagtcTTTTTATGTTACAGTTTTTAAGTAGTGATGCATAGTTTTGCTTGACTGAGATCACTGTTAGTACCACTGAATTTATTGCATTGTGTTAAAGTTTCCTATTTAAATATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49878 lncRNA downstream 9778 7313668 ~ 7315596 (-) True G42173
XR_004577839.1 lncRNA downstream 183072 7141099 ~ 7142302 (-) True LOC117596848
TU49679 lncRNA downstream 307969 7016765 ~ 7017405 (-) True G42008
TU49614 lncRNA downstream 313068 7012093 ~ 7012306 (-) True G41944
TU49606 lncRNA downstream 383916 6941240 ~ 6941458 (-) True G41938
TU49892 lncRNA upstream 4036 7342467 ~ 7342681 (-) True G42179
TU50043 lncRNA upstream 98011 7436442 ~ 7438889 (-) True G42315
TU50045 lncRNA upstream 100607 7439038 ~ 7439236 (-) False maml3
TU50091 lncRNA upstream 229940 7568371 ~ 7652220 (-) True G42361
TU50124 lncRNA upstream 333156 7671587 ~ 7672864 (-) True G42391
XM_034302882.1 mRNA downstream 368 7319676 ~ 7325006 (-) False LOC113538928
XM_026934409.2 mRNA downstream 852 7319099 ~ 7324522 (-) True LOC113538928
XM_026933042.2 mRNA downstream 120675 7161474 ~ 7204699 (-) False lef1
XM_026933026.2 mRNA downstream 120675 7161474 ~ 7204699 (-) True lef1
XM_026933034.2 mRNA downstream 121223 7161474 ~ 7204151 (-) False lef1
XM_026941281.2 mRNA upstream 23484 7361915 ~ 7384163 (-) False si:ch211-113e8.3
XM_026941297.2 mRNA upstream 23484 7361915 ~ 7384163 (-) False si:ch211-113e8.3
XM_026941290.2 mRNA upstream 23484 7361915 ~ 7384163 (-) True si:ch211-113e8.3
XM_026941246.2 mRNA upstream 100473 7438904 ~ 7589663 (-) True maml3
XM_026941317.2 mRNA upstream 291738 7630169 ~ 7646075 (-) False clgn
XR_004577908.1 other downstream 121223 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 121223 7161474 ~ 7204151 (-) False lef1
XR_004577821.1 other downstream 1505861 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 2097451 5203706 ~ 5227923 (-) False lsm6
trnam-cau_1 other upstream 1128553 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1129605 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1130640 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_4 other upstream 1131555 8469986 ~ 8470057 (-) True trnam-cau_4
trnae-cuc_7 other upstream 1131927 8470358 ~ 8470429 (-) True trnae-cuc_7

Expression Profile