RNA id: XM_034302592.1


Basic Information

Item Value
RNA id XM_034302592.1
length 2651
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC113542012
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28465659 ~ 28487384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcaacatggcggCTCACACTGTGAAGTGTCAAGTCCCACTTCTCTACTCTgaaattagtttatagcagtatcggctttagatcagttaacatacagatacagtactTGGTTAATATCTATAACAGTGACCATACTAatcgctgttttgagaaggttaTCATCAACATTAGCGTTATCACTAActttagcttgttgctaacgcTACTCGCTATGGTCCGCTAGCtggcttgttgctaagctactcgctaGCAACAAGCTATTGtccgctgttgttgctgtgcaaATTCTGttcaaaatgttgcatgaatgtttgaagttcactatagtagaacagtAGCAATAGCCAGTCAGGTATGGAACTGTAACCGTGCTGTTTTATGAGCATAAATGccctgacagagcaaacaaaagacacactttcatggaggcgtgaatgtttttccccccactttaaCTTCCAATGTCCCGAGGAGCTTTACAGAGCCATGAAGCTGCTGAGCAAGGAGGAGCTGAGGAAAGCAGAGGAAGCACTCACACATTACTTTCCCCAGTCACTGCAGgtATATGGatatatttgtataattaaTAGAATAGAAGCTGATCCCTCAGATGTGCTGGTGGACCAGTGGCCAGATTTCAGTGTGCTATTTATCAGACCAAAACGGCAGCAGAAATCAGACCATTTTAAAGCCATAAGCATTTTTACCATGGATGAAACAACTCTCAGGAACATACTGATCAGGACAGATGTTCTTGACTGGAAGCAGTACCTCAGTCTAAGTGTTGACCTGTGCCATGAGGAGATGCTAAAGTTCGTAGCTGTGAGCAGAGGGGTGCCAGTGAACAAAGATCATGTGTGCCACCTGATGCAACTGCAGAATCCGTCTAACCTTACAAGTGAAAGGTTACCCATACGAGTATCGTCACTTAACGAGTCGCACATTGCTCTGGTCAATAGCACGTGGAAGTTTGGCATTGGTGAATTCAGTGAAGCGTCCATCAGGAACATGATCATGAATTTCCCTTCGTGTTGCGTGCTGGACTCAGAGGGTCGGCCGGTGTCATGGATTTTGACCTATGCTTCCTGCGCGATGGGAATACTGTACACAATGCCAGAGCACAGACGGAAAGGCTACGCCAAAGCCCTGGTCACCATATTGGCAAAGAAACTGCATTCAGAGGGCTTCCCAGTCTACTGCTTCATTGAGGAGGAGAACCAACCATCCTACAGGCTCTTTACCAGTTTAGGTTTCACTGCAGATCCGTCTTACAGGGCTGCTTGGATTAAATTTAATCGAGCATGTTTAATCAAGGCTCCATGAAGACTCCCTGAAATCTCATGAAATTCATACAAATTCAAATCAGTGAGGTCAACatgtttagattttatttaattttctacaaAATAACTGAAACAAATGCTTCCTTCACCATTCCATAACCTTAACCTGGTATCACAGCTTGAATCATGTCAATTGTTTTGAATTCACAAGGGACTGTGCTCATCTGAGTAGTTGTTAAAGTATTTGTAAAATCTATAACAAGCCAAATGATATGAAAAACAATATGCTGAAGACAAATCTGTTCATGATTGCATGCTTTCTTGGTGCACCTATAGTAGAGTGTACGATGCCCTGGCTGGAACATCTGTACGGTTTCTGccatacattttttataacctctctctgtttcattatTGACTTAGatgtatttaaattttctttagaagtttaaaaaaacaaaatctaaaattatGAGATCTTTTCATGCTTTATATTTTACAATCGTTGACTTTGAATATAAGCTGATACTAGTACATAAGCCAGTGAGTGCTTCACATTATGTTCTTTCATAATAAATCtatcaaaatgtttattataaatatgcattaaaaaaacatgtttataatgTCTACCAATATTATGAATTTAAGAACAGTAGCCCGTAAGTAGATCGTAAAAACATTTGATGCGAATTCCCCTGACAGTTTTCTTATTCAGGTGGTGtactggtaggtggactggctaaaataaattgcccctatggGTATGggttatatactgtaaataagatGCATTTACATACCAGAGGCATCATGAAGCGATGACCTGGGTGACCTTGGACAGATgaactatattattatatgatcTCATATTGACAGTAAATCAGATGcaattttgtacatttcatttaataatttgattCAGTGTTTTGTTAATAAGCAGCTGTTTATTTGTTCAGGATGACTCacctatatttataaatcaagcttaaataatctaatttattattaataatatttgcaatgAACAATTCTCCTGTCATTCAATATAGTCTGTTAAAAGTaaggttgctaagcaacatgaGGGACAATAATTAGGGAATATTATGAACAGAACAATGATATACAATGACAGAGCTAATATACAAAACTGATGTTTGATGAGCCTTTGAAAGAGTCTTGAAGCGACTCTTGAAGTTATATTTTCTATTTAGTTTTAAAAGTTAATAGTCATTAGTTTTAAAGTTATTTGAGACATGGGACAACCTCTTGAATTGAAAGGGTCCCATCTAAACAAGTAGGCCTATAagtaatgtcaacttggacctaatgacagtgaaagttcaggaataaaaagctctatagcTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63411 lncRNA upstream 16795 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 27822 28436980 ~ 28437837 (+) True G53629
TU63406 lncRNA upstream 87396 28374776 ~ 28378263 (+) True G53688
TU63400 lncRNA upstream 139476 28325642 ~ 28326183 (+) True G53682
TU63349 lncRNA upstream 164167 28299833 ~ 28301492 (+) False pde10a
TU63419 lncRNA downstream 6164 28493548 ~ 28496606 (+) True LOC113542011
TU64516 lncRNA downstream 630682 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 637109 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 964512 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 1193142 29680526 ~ 29684999 (+) True G54958
XM_026939274.2 mRNA upstream 961 28453773 ~ 28464698 (+) True psap
XM_034302812.1 mRNA upstream 961 28453773 ~ 28464698 (+) False psap
XM_026939273.2 mRNA upstream 961 28453773 ~ 28464698 (+) False psap
XM_026939138.2 mRNA upstream 13550 28449126 ~ 28452109 (+) True mrps6
XM_026939196.2 mRNA upstream 30247 28396192 ~ 28435412 (+) False micu1
XM_026939246.2 mRNA downstream 159 28487543 ~ 28494686 (+) False LOC113542011
XM_026939245.2 mRNA downstream 159 28487543 ~ 28492182 (+) False LOC113542011
XM_034302604.1 mRNA downstream 225 28487609 ~ 28492182 (+) False LOC113542011
XM_026939315.2 mRNA downstream 21671 28509055 ~ 28516011 (+) True mad2l1bp
XM_026939316.2 mRNA downstream 21795 28509179 ~ 28516011 (+) False mad2l1bp
TU63410 other upstream 17348 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1258414 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1259264 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1259289 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1472948 26985978 ~ 26992711 (+) True G53328
trnav-cac other downstream 618060 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 620458 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1224874 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1450164 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1866938 30354322 ~ 30358454 (+) False mgst3b

Expression Profile