RNA id: XM_034302737.1


Basic Information

Item Value
RNA id XM_034302737.1
length 4046
RNA type mRNA
GC content 0.44
exon number 23
gene id herc4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24661985 ~ 24735888 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGTTCAGAACGTTAGAGAAATACCTTCGCGTGCCTTCTACTTAGGAATTTGCGGATGTCATTGCCCACATCGACAACTACAGGGTTTTGAGGATTTGTTGACAAGAAGGACCCTTCTCATacccataataataattataatcttTAGGAGTTTATGGTCTAGAGGTCCCCTTACTAACAACAGtttTTGAACTTGTTGAAGCTGAAGACATCGCCATAACCATGCTGTGTTGGGGAAATGCCTCCTATGGCCAGCTTGGATTGGGTGGAATTGATGAAGAGATCATAGTAGAGCCCCGCAAATGTGAATTCTTTAACGGGAAGGTGGTGCGAGGTGTAGGCTGTGGGAGAAGACACACTGTTTTTCTGCTTGGAGATGGGACTGTGTATACATGCGGCTGCAATGACCTGGGACAGCTGGGGCATGACAAGGCACGCAAAAAACCAGagCAGGTAATGGCACTCGATGCTCAGAACATTGTAGCGGTATCTTGTGGTGAGGCCCACACTCTTGCTCTAAATGACAAAGGACAAGTGTTTGCATGGGGATGGGCTTCTGATGGACAGCTTGGCCTTGCCAACATAGAAGAATGTATGCGTGTGCCCAGAACAATCAAGAGTTTGTCAGAGATCCATGTTGTCCAGGTCTCCTGTGGTTATAGACATTCCCTTGCACTTTCTAGGAGGGGACAGATTTTTTCCTGGGGGCAGAATAGGTATGGGCAGTTAGGACTGGGGAAAGAGGGACCTTGCGTCTTGATGCCACAAGTCATCCAGTCTTTACAGGGCATCCCATTTGCCCAGATCTCAGCAGGAGGTGCTCACAGCTTCGCACTCACCATGTCTGGGGCTGTATTTGGTTGGGGGCGAAACAAGTTTGGCCAGTTGGGCCTAAATGATAACAAAGATCGATGTTTTCCATCCTTGCTGAAGACACTCAGGTCCCAAAGGGTCGTTTATATCTGCTGTGGAGAGGATCACACTGCTGCGTTAACAAAgGAGGGAGGTGTGTTCACATTTGGAGCAGGTGGATATGGTCAGCTGGGACACAACACCATAAACCACGAAGTTAACCCGCGAAAGGTTTTTGAACTCATGGGGAATGTTGTTACACAAGTAGCTTGTGGTAGGCAGCATACCCTAGCATTCATTCCATCCTCTGGCAAGATTGATTCTTTTGGTCTTGGAGGAAATGGACAACTTGGCACACGTTACACCTGCAACAGGATAAGTCCTGCTCCTGTAAAAGGCCAGTGGAGAGCTCACAGTGACCCCATACCAATAGATTCTGAGGCTGAGTTCTACTGTGTGAAGAGGATTTATGCTGGTGGAGACCAGAGCTTTGCTCATTGCCACTGTCCTCAGaaTGGCTCTCCCCCAGATGATCTGCGAATACAACATTGTAATCAGCATGTCTTAAGCTTGAATGGTGACCTCATACAGAAATGGCTGAGCCACGGTCATGGAAGACTCTCACCAGaaattacagtTGAGATTGATGATGTATTCTCCTCACCAAGTTGTCTAAATGGGAGTTTTCTTTCTACAAGTCATCCAGATCATTATCACACTAGCAGTAAATGTCCTGGGGTGGACATGAACATGGCTCGCCTCCTCTTCCACAGACTCATCCAGCCTGATTATCCACATATCACACAGCAAATCGCTGCCAGTTTGGAGAGGCATTTGATTCCCAACCTGTGCAGCTCTCCTCCCGATATTGAGGCACTGAGGCTCTACCTCATACTTCCAGAGTGTCCTCTGTTTAAAAACCCCAACACTTACATCACACTCACCATTCCCTTTGCCAAGGCAGTCATCCGCCTCAGCAATGCTCCCCTCAAAGTGCTTGGAAATTGGTGGTCTTGCCTTGATCCAACAGTGTTTCATGGACTTGTGGAATTGTATATAGAGGTGATTGTGTATCTGCTCCGGATGCAGAAGATGGGAATTTCGCCATCTGAACACAGGACATTTACCTGCTTCCTCAGTACCTGTTTGAAATTTCTGGAGATTCTGCACTCCgtaAATGAGCGAGCTGGCCAAATTATTCAGTATGACAAGTTTTATATACATGAACTGCAAAACCTTGTTGACATCAGGAGTGATTATGTTACTTGGATCCAGCATCAGATGTTCTCCATGGGCATGGATTCTCAGGTCACCCTGTGCAAATACCCGTTTATATTTGATGCTCAGGCAAAGACCACACTGCTTCAAACTGATGCTGTTATCCAGATGCAGATGGCTGTGGACCAAGCAGAAAGACAGAACCTCAGCTCTTTATTCCTGCCTGGTGGCATGGTGGAGTCAGTAAACCCATGCCTCATTCTCATGGTGCGCAGAGAAAATGTTGTTGAGGACACTATGGAGGTTTTGCGGAAGTCCAAAAATGTTGATTACAAGAAACCTCTAAAGGTGATCTTTGTTGGAGAGGAGGCTGTAGATGCCGGAGGTGTGAGGAAAGAATTCTTCCTCCTCATCATGAAAGAACTGCTGGACCCCAAATATGGCATGTTCAGGTATTACGAGGAGTCCAGACTCATCTGGTTTTCAGACAAGACATTAGAAGATATCGACTTATTCCACCTCATTGGAGTCATTTGTGGTTTGGCCATTTATAATCTGACTATAGTGGAACTAAATTTCCCTGTAGCCCTGTACAAGAAACTCTTGAAGAAAACTCCGACTTTGGAGGACCTGAAGGAGCTCATGCCTGTTGTTGGCAGGAGTCTGCAAGAATTATTGGACTACATGGATGATGATGTTGAAGATACATTCTGCTTGAACTTCACAATTACTGTGGAAAATTTTGGTGAAACTGAGGTATTGGAGCTGGTGCCTAATGGAATTTACATCCCTGTAAACAATCACAACAGACAAGACTTTGTAAATGCCTACGTTGACTACATTTTCAACTCATCCGTGGCTCCTCTTTTCAATGCCTTCTCTGCTGGATTCCACAAAGTATGTGGAGGGAAAGTTCTGGAGCTTTTTCAGCCAAATGAACTACAGGCCATGGTCATAGGGAACACCAATTATGACTGGAAAGAACTAGAGAAGTCTCCACTTTTCTATAAAAGCTGATTGGActgtggctgtggggatgtgtgcccattcagccacaacagcacAACAGGTTGAGCACTGATGTCCAGCTAGAAGGTCTGACATGAAGTTGGTAttacagttcatcccaaagtgttcagtggggttggggtcagggatgtgtgtgtgccactTGAGTTTTTCCACACTAACCTTGGGAAATCATATGTTTATGCAACTCACTTTTTGAATaggggcattgtcatcctggaacaggtttgggataggcctcttagttccagtgaaaggaaattttaatgctataGCCTACAAAGATGTTCTAGACAATAgagtgtttccaactttgtggcaacagtttgggtgAAGACccataaaataaagtaatagaGAAGTTGAGTAAAGGGTAGAAGAGGATAGCCTGACATGTACAAATTGTAGTGATGTGTAATGTGCTTAGTGCAAAATTTAAAGGATATGTACAGTCATGGgtaaaagaaagtacaccctgtTTCAGTTCTgcgtttttatttatcagggcctaaataacaattgtgtggtcctcaacAACTTCTGCAAACAACCAAccaacctcaggtgacaacagaaaaacacaatagaTTTCAGCaggtagtcattttttcccaaaaagtaaacaaacattcagaaaccaggtgggaaaaaatatgtACACCCTGTAATTCCGTAACACCTTTAGCACCACTTGAACCATCTTTAGTTAACTTGAACTAAACGTTTTCTGTaagagtttatcagtctctcacattgttttggagaaattttggcccccTATTCTTTACAACGTAGcttatttatttgatgtttgagggcatttgtttatcTTCAGATCCTGCCACAGGTTGAGGACTGGagtttgacttggccattccagcaccttgatttatttcttctttagccattcagattttctggtgtgcttgggatcattgccCTGTTG

Function

GO: NA

KEGG:

id description
K10615 HERC4; E3 ubiquitin-protein ligase HERC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61618 lncRNA downstream 17326 24650117 ~ 24651824 (-) False lyst
TU61657 lncRNA downstream 26234 24642096 ~ 24642916 (-) True G52157
TU61647 lncRNA downstream 63403 24548671 ~ 24605747 (-) True G52147
TU61654 lncRNA downstream 104864 24563956 ~ 24564286 (-) True G52154
TU61566 lncRNA downstream 252724 24415319 ~ 24416426 (-) True G52076
TU61766 lncRNA upstream 2951 24738828 ~ 24742668 (-) True G52259
TU61790 lncRNA upstream 51636 24787513 ~ 24787859 (-) True G52282
TU61791 lncRNA upstream 53014 24788891 ~ 24789095 (-) True G52283
TU61808 lncRNA upstream 143620 24879497 ~ 24881956 (-) True G52300
TU61812 lncRNA upstream 184795 24920672 ~ 24923852 (-) True G52304
XM_026939234.2 mRNA downstream 17303 24451986 ~ 24651847 (-) False lyst
XM_026939252.2 mRNA upstream 77097 24812974 ~ 25090822 (-) True LOC113542016
XM_026939333.2 mRNA upstream 572429 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA upstream 572429 25308306 ~ 25330164 (-) False dnajc12
XM_026939496.2 mRNA upstream 758799 25494676 ~ 25504756 (-) True msh6
XM_026939162.2 mRNA upstream 949807 25685684 ~ 25697851 (-) True LOC113541965
XR_003404244.2 other downstream 17303 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 17303 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 629050 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1214933 23447908 ~ 23454217 (-) True G51576
XR_003404066.2 other downstream 1880367 22774355 ~ 22788783 (-) False znf318
XR_003404274.1 other upstream 1174141 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2801899 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3697343 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 4466055 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 4943534 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile