RNA id: XM_034302812.1


Basic Information

Item Value
RNA id XM_034302812.1
length 2337
RNA type mRNA
GC content 0.49
exon number 15
gene id psap
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28453773 ~ 28464698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAGCTGGTGTCAGTGCACCGCAGTGCGGTTGCGGTACACAGCTCTGAGCAGACAGATAGCCTGTGCTCACGGAGAGAGAAGTCACAGAAAAAGGCGCTCTGCAGTGAACTCAAGATGTTCCTCACGCTGCTTTTGGTCTCCACGGctGTGGCCAGCCCTCTGCTGGGAACTGAGCAGTGTGCTCGTGGGCCCCCGTACTGGTGCCAAAACGCGAAGACGGCTTCCCTTTGTGGTGCAGTGTCCCACTGCCAACAGAATGTCTGGAATCAGCCTCATATGAAATCAGTGCCATGTGACTTATGCAAAGAGGTGTTGATTGTGGTAGGCCAACTGCTTAAGGACAATTCAACAGAGgcTGAGGTCCTGAGCTACCTtgaaaaaacatgccagttgaTTCCTGATGAAGGCCTGGCCGCTCAATGCAAGGAAGTTGTGGATAATTACTTCCCTGTCCTCATTGACATTATTAAAGGAGAGCTGGAGGACCCAGGTGTGGTATGTAGTGCTCTTGGCCTGTGTGTATCCCAGCAGGAGGTTCTTGCCAAAGCTCAGCTCATATCCAATGAGATTCCTAAGGTGGATCTGACCCAGAGGGTTAATCCATTACTCCTCAACATCCCTCAGCTCCTTTACCCCAAGGAGAATGCCAATAAGGAGAAGGAGATCACCGCAGAGGAGAGTGATGCTGTGTGCGATGACTGTGTAAAGTTCATCACTGACACTCAGGAGGAAGCCAAGAAAAATGCTTCCTTTGTCACCTCCCTGATTGAACAGATTGAGAGGCAGTGTGACCTGCTGGGTCCTGGCATGGCTGAAATCtgcAAGCAGTACGTCGGCCAGTACGGTCCTCTTGTTTTTCAGCAGCTCATGTCCATGGAAAAGCAACCCAAAGACATCTGTTGCCGTGCTGGTTTCTGTGACTCCACCCTCGAATCTGTTCCCATGCTGAATCTGGTTCCTGCTAAATCCATCCCTGCAAAAAAAACCATCCCTGCCACTAAACTGAAGATGGTGCGTGCCCGTGAATCCCCTCAGTGTGCCATCTGTGAGTTTGTGATGAAGGAGCTTGAAAGTATAATCCAGGACCACACCACTGAGGAAGAAGTGGTGCAAGCTGTGGAGAAAGTGTGCAGCCTCCTGCCCTCCACCCTTACTGCTCAGTGCAAGGATCTGATTGAGACCTATGGCCAGGCAATCATTGAGCTGCTGATACAGGAAGCTGATCCCAAAACTGTCTGCAGCCTGCTGGGGCTGTGCAGGGACGCGAGTCGCGCCTTCATCCCTGTGATGGAAAAGGCTGAGTTTGAGGCTGGTGGGTTCTGTGATGTGTGCAAGATGGCTGTGCGCTACATAGACGGCATCCTGGAGCAGAACGCCACAGAAGCCCAGATCGAGGAGGCCGTGAAAAAAGTCTGCAACTTCCTGCCTGATGAATTTAAAACTCAGtgtgacCAGCTCATTGAGCAGTATGAGCCTCTGCTTGTCCAGCTGCTGCTCCAGGCCCTCGACCCTGACTTTGTCTGCATGAAGCTGGGTGCATGCCCTGGAGCACTGCGGATGCTGCTGGGTGTTGAGCAGTGCAGCTGGGGTCCAGCCTTCTGGTGTAAGAACATGGAGACTGCCACCCGCTGTAATGCGGTGACCCACTGCAGACGTCACGTTTGGAGTTAGAGTGGAGCGGAGTGCACAAACTGACCTAAGGAGTTAAAGGAGAATGTCTGTAGCGCTGTGTATCTGTTATACAAAAATCGGCCCTtccctgtgtttttattttagacGGTGAATCAGATTTAAATAGTTCTATCAAAACAAATTAAGCAATTTTGCCATCTGGGGAGGATTAAAGTTGCCACTCGAGGGAAGGTAAAAGTACTATGCGGGAGGTGGAGGACATATGGAGGGGAGTGAATTTGACTgaatttttttactgaatgtGAACTGAATCTTCAACTGCTGACATTTTGATTTGGGGTGGCAATAGTTTTAGTGTGCTTTTTCTTCCTTGAATTGCTCTGTTTTTCTTCAAAGGgtgattttgtgtgaatgtgggtgGGCATTAAAGATAAGGTTGTGCCTTGAGCAAAGAGGAAGTCTAGGATGTCTGAATGAAGACCGTTTTGACTCCCTTGTAAAGGAAAACTTGCCCCTGCAACTGCTATAGCCACAAGAGCAGTGAGCTGACTTAGgagcttttgtttttactgactAAAATTTTTCATCCTAATTGAAGTTTATTTTCAATGTTTTGTAATAGCATCTGTATTCATCAGTCTGAAGGCCCTGTTAAATTCCTGTGACCTCACACCCAGTTTTTGTCTGTGGCCttgattgactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63411 lncRNA upstream 4909 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 15936 28436980 ~ 28437837 (+) True G53629
TU63406 lncRNA upstream 75510 28374776 ~ 28378263 (+) True G53688
TU63400 lncRNA upstream 127590 28325642 ~ 28326183 (+) True G53682
TU63349 lncRNA upstream 152281 28299833 ~ 28301492 (+) False pde10a
TU63422 lncRNA downstream 3075 28467773 ~ 28467983 (+) True G53699
TU63425 lncRNA downstream 19001 28483699 ~ 28483898 (+) True G53702
TU63419 lncRNA downstream 28850 28493548 ~ 28496606 (+) True LOC113542011
TU64516 lncRNA downstream 653368 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 659795 29124493 ~ 29184455 (+) True G54725
XM_026939138.2 mRNA upstream 1664 28449126 ~ 28452109 (+) True mrps6
XM_026939196.2 mRNA upstream 18361 28396192 ~ 28435412 (+) False micu1
XM_034302592.1 mRNA downstream 961 28465659 ~ 28487384 (+) False LOC113542012
XM_034302594.1 mRNA downstream 1335 28466033 ~ 28487384 (+) False LOC113542012
XM_026939247.2 mRNA downstream 1390 28466088 ~ 28492182 (+) False LOC113542011
XM_034302597.1 mRNA downstream 5790 28470488 ~ 28487384 (+) False LOC113542012
XM_034302596.1 mRNA downstream 9469 28474167 ~ 28487384 (+) True LOC113542012
TU63410 other upstream 5462 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1246528 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1247378 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1247403 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1461062 26985978 ~ 26992711 (+) True G53328
trnav-cac other downstream 640746 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 643144 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1247560 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1472850 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1889624 30354322 ~ 30358454 (+) False mgst3b

Expression Profile