RNA id: XM_026939278.2


Basic Information

Item Value
RNA id XM_026939278.2
length 6351
RNA type mRNA
GC content 0.52
exon number 48
gene id anapc1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25923030 ~ 25966974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATTGGCTGCTCTGGGCGCAGAGACTCACGGGATTGCAAAGATGTCCGCGTTCATTTGAAAGTgtgtttttacttcattttcattAGTTTTAGTTAGTTTCATTACAGGTGTAACTGCTAGCACATTCTGGTGACATCCAGTGAAAGAAAGGACCGGACTCCAAGACAAGAGCCAGGCTATTCCTTATTACCAGaaataaaatgcTGATATTGGGGACTCATGTCGAACGTGCATGAAGAGAGAGCTGCCATGATGATAGCCGCTGGGGAACTGCAGCCGTTTGTCCCGTTCGGCCGTGAGCACTGCCAACGCCACCCAAGCGCCGTGAACCTCCAGCTGCGCCAGCTGCAGCCTGCCCCCGAGCTCTGGTGCTCTGACGGAGCAGCGGGACTCGTGGGCTCCTTGCAGGAAGTCAGCctccaggagagagagaaaGAGTCCTGGCAGCTGAGGAAAGGCTCCGATGTGTTGACTGATGAAGCCGAGTATGAAGAGGAGCTGTACGTGGCCGGGCACATGGTCATCTGGAGCCGTGGGACCAAGAGTCAAGCTTCCTACGTGTACAAGGCTTTCACTGTGGACAGCCCAGTTCAGCAGGCCCTGTGGTGTAATTTCATTGTTCCTCAATCCCGGAAAGAGGAAAAGGACACAGTTGAGCAAAGTGTCTGTATAGTTCAAAGCACGTGTGTGAATGTACACTCTGTGAGTGGGAAGGACTTCATCTCCCCATTGCCGTTTCAGGTCTCCTTTTTGTGGCCCACTAAGTATGGATTGCTTTTTGAGCGCAAAAATATCACGTCTGATGCTCCATTGAGCCCATCAAGggagCCTCTTCCCACCCTCTTTAGCATGCTCCATCCTCTGGATGAAATAGCCCCTGTTGTCTGCAAGTCTACAGGGCTGTTTGAGACGCAGCGGCTGCAGTATGTATCCGACAGCGCACTTCGAGTGGTGTTCTCCTGTGGTGAACCCTCCATCATCATGACCTATGATACACTGCAGTGCAGTCATACTATCTGGGCTCTGCGCAAAGTCACACCAGAGGAGCAGTCTACAGTTCTGAAGTGTCCCAGTCAGGATGGGCTGGCTCAGACCCCCACAGCCGCACCCACTTTCCTTGGCACCCACCTGAGGAGTGTGAGCCGGCTAGACTCCCCCGGCTCGCCCCTGCACTGCCATGCCCTGCACAACCAGAGCCGTGTGCCCTCCTCACCCGCACTGCACTCCCGTGCACACTCTCCCAATATCTCCAACATGGCCGCTCTCAGCCGAGCCCACTCCCCTGGCATGGCGGCACCTTCTTTTACGGGAGCACAGCGCTTCAACATGTCATGCCACTCACCATCAGCCCGTGGACACAGCCTACTGGCATCCCCCAACAGTACCCTGAATGAAACAGCCCTGATGCCTGAGATGGAGCCCATCCTGCCTGACCTCTGCATTGAGCAGCTGTGGACAGAGACCACTAGTTCCTACAGgGAGAAGAGCTGCCAAGCATCCAAAGTGTTCATTACTTCTGACCTGTGTGAGAACAGATACCTGTGCTTCCTGGTTGAATCCCACCAGCAGCTCAGATGTGTCAAGTTTCTTGAAAGCAATGAAACTTCCCAACTCATATTTGCCTCAGTTACTTCCATTCCGGCCAAAGACGCTGCACCTTTGGAGGACATAGATGCTTTGCTGGTATTAGAGACCAATGGCAGCTTGGTGTTATACACAGGAGTCACACGGGTGAGCAAAGTGTTTGTCCCTGGTCTTCTGTCACCAACCTTTGGTTTGCCAAACCCCCTGCCACACTTAAACACCCCCCTGGAGAACGTGAGCACTCCGGCAAAAGCAACCGTCCAGCACATGAGTAGGCTTGAGGAGTCCGACATGCCTTCCCCTGTGTCAGAGATGAGAACAGTGCAGCATCATGAGTCATCATGGCTAGAGGATTCTCCGTTCCAGCAGGCAACGCCACATATCCAGGCCCTGCGAGACCCAGTCAGCAACCGTCTCACACTGGAACTGAGCAATGGCTCAATGCTGAGGATCACTATTCCTGAAGTAGCTACATCGGAGCTGGTGAAACGATGCCTACAAGCCATTCGGTTCATTCTGCCCAAAGACACAGCTATGAAGGTGCTGGTGAAGTGGTACAATATCTACAATGCTCTCGGAGGTCCCAGCATGCATCAGGAGTGGAATCTGTTTGTCACATGCTTGATGACACTAATGGGCTACAACACGGAACGTCTGTCGTGGACACGAAATCTCCATTTTGAAGTGCCCCTCTCACCGGTAATTGCTCCTAAGAAGGCACGTCCGGCAGATACAGGCTCAGATGAAGACTGGACATACCTCTGTACTTCAGACTACCACTGCCAGGTGTCCGTGTATCCAGCCCCAGGCATGTCTGGTCTGGATGCAAAAGCGTCTGCTAGTAGCATGGATGAGAGCGGGCCAGCAGCAGAGCTGGAGCCCTCAGCTCTGCTCTTCACCCACATCCCAGCACTTTTCTATGTGCTCCATCTGCTGTATGAGGACCTAAAACTGGACGAGCTCCAGCGTAGCGGTGCCCGTGCCCTCGTGGGCCTCCTGCAACAGATGGCCAGGGACCTGCAACAGGAGGAATACATTGATCTGTACTGGCGTGATTACCCCTCATTCATCAAAAGCTTCAAGGAAACCTGCAAGATAGATCAGGCTCAGATGGAGTTGATGAGCTGGCCAGTGTACCTGACTGGTGAAGTGCCCTGTGTGTTTGCGTGGCTCAGCAGCTGTCTGAGGGGACAGGAAGTGCCTCCATTCCCCTACCTGCCTGGCATTTGTGAAAGGACCAAACTGATTGTGTTGAGCTATGCGCTATATGTAGTGGGAGATGAAAAAGCTGCTTCATCTAATGTGTCTAAGTACCTGTCCAGGCTCTCTGCAGgGCAAAAGAAAGGTTTCAGTGATCCTGCTCTTAGAAGACAGAGCAGTGTGAAGCAGAGCGCTCCAACAGGCTGTCTCGCAGAGAAACTGGTGGTGTGGTTGACCTCTGAAGgCTTTATGTTGAAGGATCTGGAGTCTGTGCCTTTTGGTGTGGCACTGCCAATCCGAGATGCCATCATCCAGTGCAGAGAACACCCCTGCTCCGATTGGTCTGAAGAGGTCTGTGCTCTGATTGGACGACAGGACTTAACCAAGCAGGCTCACAAGGTTTCCCTGGCCAAAGGAAAACCGatGGTAGCACTAAATGAGCCACTAGAATCTCCAATAACGAGCGAGGcagatgaggaagaggatggtATGGCAGATCTTCATCCGGAGGTGACGGGGCTGATCTGGAGCCGTGACCTGCGTGTTCAGGAGGTTCGACGTCTGCTCCAAAGCTCCAGACCTGTACGGGTCAATGTCCCCCACCTGCCAGAGGTCAGCGACCATGAGTATATTGAGGAGAAGGAGAACAAGCTTCTCCAGCTGTGCCAGCGCACCATGGCTCTCCCTGTGGGTCGAGGCCTCTTCACACTGTTTTCATACCATCCAGTGCCAACTGAGCCCCTGCCCGTGCCCAAGCTCAACCTGACTGGGCGAGCTCCACCCAGGAACACCACCGTGGACCTGAACAGTGGCAATGTTGATGTGCCACCCAACATGGCAAGCTGGCCCAGCTTTCACAACGGTGTGGCAGCAGGCTTGAAGATTGCACCGGCATCACGTGTTGAATCGGCCTGGATCGCCTACAACAAACCCAAGAGCACCGAGCTAGCCAACGAGTATGCTGGCTTCCTAATGGCGCTCGGCCTTAATGGCCACCTCACCAAACTTGCCACGCTTAACATCCACGACTATCTAACTAAGGGCCATGAGATGACGAGCATAGGCCTCTTGTTGGGTGTTTCAGCAGCTAAGCTGGGAACCATGGACATGTCAGTCACACGCCTGCTGAGCATCCATGTGCCCGCCCTGCTGCCACCCACTTCTACAGAGCTGGACGTGCCACACAGCGTGCAGGTGGCCGCCGTGGTGGGCATCGGCCTTGTGTACCAGGGGACTGGACACCGGCACAATGCAGAGGTGCTGCTTGCAGAGATAGGCCGTCCTCCCGGCCCTGAAATGGAGTACTGCACAGACAGAGAGTCCTACTCTCTAGCCGCAGGCCTGGCACTTGGCATGGTTTGCCTTGGGCATGGCAGTAACCTGATCGGCATGACGGACCTGAATGTACCGGAGCAGCTTTACCAGTACATGGTGGGAGGACACCGACGCACACACACCGGCATTAACAGAGAGAAGCACAAATCCCCAAGCTACCAGATTAAGgAAGGTGACACAATCAATGTGGATGTGACCTGCCCTGGTGCCACCTTGGCGCTTGCCATGATCTATCTAAAAACCAACAATAGgtcTATAGCTGATTGGTTGAAAGCCCCAGACACCATGTTCCTGCTGGACTTCATCAAACCTGAATTTCTGCTGCTGAGGACTCTGGCCAGATGCCTCATCATGTGGGATGAGATACTGCCTAATGAGGAATGGGTGACTAGCAATGTGCCTCAGATCATCCAAGAGAACATTGGACTGCAGGAGGAAGCGCTAGTGTCTGAGGATCTGAACATGGAAACTTTGGTGCAAGCTCATGATTATATCATCGCTGGGGCCTGCATGGCTGTGGGCTTTAGATTTGCTGGTTCTGCAAATTCTGATGCCTTTGACTGTCTGtatAAGTTTGCTCGAAACTTCATGAAGTCTCTCACTAGCACCACGTCTACAGCCACAGTTTCAGGGCAGTATAATCTGCAGACGTGTCTGAGCATGGTGCTTCTGGCCACTTCCATGGTCATGGCCGGCTCAGGGAACCTAAAGGTGCTTCAGCTCTGCCGTTTTCTGCACAAGCGTACGTTTGGTGAGATGAACTACGGATTCCATATGGCTCACCACATGGCCTTGGGCCTGCTCTTTCTTGGAGGAGGCAGGTACACACTCAGCACCTCCAACTCCGCCATTGCTGCCCTTCTCTGTGCTCTTTATCCTCACTTCCCTGCTCATAGCACCGATAATAGgTATCATCTCCAGGCCCTGCGTCACCTCTGTGTGCTGGCAGCTGAGCCTCGTTTGCTTGTGCCTGTGGACGTGGACACTCTGAAACCCTGCTACGCCCTGCTTGACGTCACCTACAAGGAAACACAGTGGTATGAGGAGACAACCGTGGAATTGATGGCTCCCACTATGCTCCCTGAACTTCATCTTCTGAAACAGATTAAAGTGAAAGGTCCAAGATACTGGGAACTGAACATCGATCTGACCAAAGGAACTCAGCATCTGCAGTCCATCCTTTCCAGAGACGGCGTTCTTTATGTGAAGCTGCGTGCTGGACAGCTGCCCTATAAGGATGATCCTCGGGGATGGAAAAGTCTGCTGGCTCCTAGTGTCAACAACAGAAACCCAGAAGTGCGCACTTTCAAGCCTGAAGCCATTTCGACGTTCACGTCAGATGCTGCCTTGGTTTCCTTTGCAAAGTACTTCTGTGAAGCCTCTGAAAACATGAAGAATAAACAGGACACTGTGGCCTTATTCTCAGCTATTCTGTATGAATGTGTGACCCAGGAAAATCCGGAGATGCTGCCCACCCATATCTCAATTGAtcagGTTGTGAAGGCTCTGGAGCAGGGAGAGCTGAGTGAGACGTTCTCGCTGTGGCAGATGAAGCTCGTGCTGGAGCTCTGTGAGAGCAGAATATTACAGCAGAGGCTGCGGGACACACGCAGGCAAAGCCGTGGTCTGCTGCTAAGTTCTGAGTTCCTGCCCGTCATGAAGACCTCAGCCGACCAGGCGCTAGACCGTTGGCTCTGTGACAACAGACATGTGCTGCAGGAGTACATTAGCAGGCTGCCTACCAGTGATGATACAGACACCAGCATTCTAGCCTGCTTCTTGATCTATCACTCAATTCCTAGCTTCAGGAAGATGGCCACAACAGACCTTGAGGGGTGCTCGTCTTTCCCTGAGCTGCTGTTGAAGTTCAGTCAATTGGGCGTTCCTGTTCGAGGCCTGCTACATCTCAGTCCTTTGCTTTTACACAATGGTGGCTCTACTATATCGCAACACTTTTCCTCTGACCCCCAGAGGTCATGAACCTAATATGCGCCCTTACTGTTTTACAGCAGGGATATCCACATGTCTTCCTAGGGAGACTCCAACACCCAACTAACATAAAATCCTTTCTGGGATATTCAAAAGATGACCCAGGTTTCATGGCAAGGCCTGGCTTAAATAGTAGGTCCTTAGGCTCAAAGATGACCACTGCTGCATTGCGgttatgtaaataatttgtatCCATGTTTGTGTCTGTGATAATGGTGTCAATAAATGATTTGAAATGAG

Function

GO:

id name namespace
GO:0005680 anaphase-promoting complex cellular_component

KEGG:

id description
K03348 APC1, ANAPC1; anaphase-promoting complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62392 lncRNA downstream 1966 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA downstream 6079 25915462 ~ 25916951 (-) True G52792
TU62388 lncRNA downstream 56943 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 76138 25843285 ~ 25846892 (-) True G52759
TU62375 lncRNA downstream 76917 25843012 ~ 25846113 (-) False G52759
TU62635 lncRNA upstream 149914 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 283381 26250355 ~ 26286280 (-) True G53047
TU62704 lncRNA upstream 286371 26253345 ~ 26288933 (-) True G53046
TU62709 lncRNA upstream 291456 26258430 ~ 26262823 (-) True G53049
TU62708 lncRNA upstream 306942 26273916 ~ 26276092 (-) True G53048
XM_026939300.2 mRNA downstream 131630 25772887 ~ 25791400 (-) True lhcgr
XM_034302898.1 mRNA downstream 152984 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA downstream 152986 25750053 ~ 25770044 (-) False mertka
XM_026939162.2 mRNA downstream 225179 25685684 ~ 25697851 (-) True LOC113541965
XM_026939496.2 mRNA downstream 418274 25494676 ~ 25504756 (-) True msh6
XM_026939525.2 mRNA upstream 34456 26001430 ~ 26006094 (-) False LOC113542170
XM_026939524.2 mRNA upstream 34456 26001430 ~ 26004309 (-) False LOC113542170
XM_026939523.2 mRNA upstream 36165 26003139 ~ 26011780 (-) True LOC113542170
XM_026939067.2 mRNA upstream 100000 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA upstream 100000 26066974 ~ 26071989 (-) False LOC113541884
XR_003404274.1 other downstream 12911 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1187143 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1271183 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1271183 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1882930 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1570802 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2466246 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3234958 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3712437 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 4144857 30111831 ~ 30122655 (-) True G55209

Expression Profile