RNA id: XM_034302635.1


Basic Information

Item Value
RNA id XM_034302635.1
length 2539
RNA type mRNA
GC content 0.46
exon number 15
gene id mcph1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27562257 ~ 27598047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgattcagcttaATCAGCTAATGAACAGCTCTTACTCAGTTGAAGTGGGGTTGAAGACTCCCCAATTCAACCATGACATCAAAAAAAGTTCCTGCGGCTGTACTCAAAGATGTTGTGGCGTATGTGGACGTGTGGTCTGCGAGTAAGACAGAGAATTACTCCGATCCCTTTATTCAGCAGCTGCGGGATATGGGTGCTCAAgtgtgtaaaacattcaacaAACAAGTCACCCATGTAGTGTTTAAACACGGTCATCAAGCCACATGGAATAAAGCGAAGAAAATGGGTGTGAAGCTCGTGTCTGTCCACTGGGTGGCCAGGTGCAAAGAAAACGGCGAACACGCCGATGAAGACCTTTACCCTGCTCACAACGAGGAGTCACAGCTTAGTCACTTGAAAAAGAGAACAcaCCGATGCATGCAACCCAGGGACATTCCTCTAAGCACCCCTCAGCGCTTGAAGAGAAAGCTGGACAAAATGATGGAGGAACTAGTCCGCTCTTCTCCCGTAGttacagatacagacacatcTCCATTCATTATTGATGAGGAGAACGGGATAGTGTACAGTCCCTCTTCTAGAAGGGCTGACACCATGGCTCAGCGGCTGAGGGAAATGAGAGCACAGCGGGAGAATCTCTCTCCTACTGCTTCTCAAATACAGGGCTCACCAACGGATGACTCTATAAGGCCATCTCTTggggacacacccacagactTAAACAAACTGCTACTGGaggaagaagaagaggctTCGAATTGTTTGTCACTCACCAGCTCCAGCAGTGAGACAGGATTGAAAGAACGCCACAAAAAAATATCATCTAAGAAGACAGCTAATAGACATGTTGAGAAGTCACCTCCTGACTTAGATGTGGGTGTGAGGTTCAGCTCTTCAGGTGTTAAAGAAGTCGTCCCATCACCACAAAATAAAAGGCGAAGCAAATCCTGTTCTAGAgtgaagaaacagaaacagtcTTCTTTAGATTATGTGCATACAGTATCATCAAAAAAATCAGATTCACCTCTTTTATCTGAGCCTAAAGCTGGAGCAACAGAAAAACCTAGACAGTCATTAGGCAATAAGAAAAGATCCCAAATCAGGTCCTCTTTAAGCAGTATGGAAACTGGACCAAGCCAACTTCCAGAAAgcacaaaagaaataaagaccAACAGTGACTCGGGTGATTGTGACAGAACACATTTGCTGAAACTTGCTTGTTCACCTAAAAGCAATGACCTGAAGATTCAGAAGgcacttaataaaaaaaagccagcaGACATGTCTGGTTCTGGTGACCAATTTGACCCTCATAACGATAACAACAATGATGACAGTGTGTTTGAGGACTACTTCACTTCAGCCAACGACGCACCAAAGCGGAAGGTCCTGGTACTGCATTCGGCTTCTGAAGCAGAGCGTTTACCATCTTTTGACCTACAGCCTCTGAACAGAGCTAGACGCAAGAGCCATTCACGGGAAAACTGcagcagaaacagaaaatcTAAAATCTTAAACGATAGAGCTATAATGGAGGCATCAGGCCCACCAGAGGAAGAGCTGTTGGCTGCATGTATGGGTGCATCTCTCCCAGTTCCTAAGGAGTCCGAATTTGAGAAGCCCGAGCAAGAGCCTGCTTCAAAGAAACAGCGGAGGACAACCAAGCAGAACTCGGTTACTCTTTCAGAAAGCACACACAGTAAAAGCACTTCAGATGGGCTCACTGACAGATGTCCTGAATTGTGTAGCGAGATGAACAAAAAACGGATTGTGAAAATGGATAAGTACATGAAGAAGAATAGAACATTAGTAATGACTAGCATGCCAACTGAGAAACAGCAGACGGTCATACAGGTGGTGAATTCTCTGGGTGGCTTCACTGTGGTTGACACCGTGTGTGAGAGCACGACGCACGTGGTGTCAGGAAGTCCACGACGCACCCTCAACATTCTACTGGGCATCGCACGAGGATGCTGGATTCTCTCCTTTGAATGGATCTTATGGTGTCTGGAGCACCGGCAATGGGTTCCAGAGGAGCCGTATGAACTATCTGATCACTTTCCTGCTGCACCGATCTGCCGGTTACAGCAGCATCTTTCGGCCGGAGAGCACCAGCAGGATCTATTCCGTGACCAGCCACTCATGTTTGTGTCATCGCTGTCTCAGCCGCCCTGCCACAGTCTCACGGAGCTCGTCCAGCTGTGCGGGGGCGCCGTGTGCAGGAGCGTTCGCCAGGCCAGCATCTGCATCGGGGAATACAAAGGCAAAAAGCCTGAAGGGACCAAGTGCCTATCAGAGCAGTGGATTTTAGATTGTGTGACTCATCATGTGCTGCTCCCATATGACAACTACCTTCTGGAgtagagagacagtgtgtgatggtgacaTTCCTGTGAATGGAATACTGTGAATTTGTGACATATAACATATGCACCATATGTATGTTTGTAAGTTGTGTGTAtttgattgattattttatgAGTATTTGACATTTTTCCTGTTGTCTGTTATTGTGTATTAGATACTGTTTAATAAAAct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63458 lncRNA downstream 29299 27530679 ~ 27532958 (-) True G53729
TU63617 lncRNA downstream 194197 27367361 ~ 27368060 (-) True G53862
TU63597 lncRNA downstream 242635 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 247906 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 308305 27226345 ~ 27253952 (-) True G53732
XR_004577818.1 lncRNA upstream 380397 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 394240 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 502326 28100373 ~ 28100589 (-) True G54201
TU63970 lncRNA upstream 508668 28106715 ~ 28175966 (-) False G54204
TU63973 lncRNA upstream 508668 28106715 ~ 28107820 (-) True G54204
XM_026939225.2 mRNA downstream 2237 27548265 ~ 27560020 (-) True agpat5
XM_026939227.2 mRNA downstream 20926 27537769 ~ 27541331 (-) True zgc:163080
XM_026939512.2 mRNA downstream 36315 27518869 ~ 27525942 (-) True polh
XM_026939457.2 mRNA downstream 57949 27501662 ~ 27504308 (-) True LOC113542117
XM_026939479.2 mRNA downstream 88536 27437145 ~ 27473721 (-) True pcsk2
XM_026939399.2 mRNA upstream 469726 28067773 ~ 28099456 (-) True myom2b
XM_034303053.1 mRNA upstream 469726 28067773 ~ 28097920 (-) False myom2b
XM_026939320.2 mRNA upstream 716666 28314713 ~ 28330532 (-) True oit3
XM_026939354.2 mRNA upstream 735578 28333625 ~ 28388691 (-) True mcu
XM_026939481.2 mRNA upstream 838958 28437005 ~ 28446340 (-) True nolc1
TU63465 other downstream 20958 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 1652138 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2826370 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2910410 24453119 ~ 24651847 (-) False lyst
TU64047 other upstream 835173 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1603885 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2081364 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2513784 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 2513987 30112034 ~ 30122822 (-) False G55209

Expression Profile