RNA id: XM_026939300.2


Basic Information

Item Value
RNA id XM_026939300.2
length 3225
RNA type mRNA
GC content 0.47
exon number 11
gene id lhcgr
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25772887 ~ 25791400 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctctctctctctctctctctctctagccaCTTTTCAAACACTCTTGTAACGGTACCTTGTACTCGACGTTTTTTCCTTTatccacctgtttttttttcctttaatgattCACTTTGAGCTTGGAGGAGATGTGGAAAAGAGCTGATTGAACTGTCTGGTGCGCGCTCGCCCCTGTGCATTACGCATCCAAGAAAGCTTATTATACTGATCAGTACAAACAGaagacaaacagacacaatGAGGACATCGCTTTTCATCTTCAAGTTCATGTTCATGATGTGGCAGTGTGACTGTTTGCGTTTTGTGTGTCCGGAGATGTGCCGGTGCTCCATCAAGACCATCAGCTGCACCAGCGCGACTGAAGCCATGGCGCAGAAACAGCGCGGCGCATTCAGCAGACTtgctCTGAACTATATCCACTTAAGGACAATTTCCAGTTTCAGCTTGGATGGACTGCGAGGTGTCAAAAGAATAGAAATTGCTCAAAGTGTCACGCTGGAAACCATAGAGACCCAAGCGTTCAACAACCTCCTCAACCTCTCAGAGATATCAATCCAGAACACTCTGAGCCTGGTCCATATCCACCAGCGGGCCTTCAACAATCTACCCAAGCTGAGATACCTGAGCATCTCCAACACGGGGATAGTTGTGTTTCCTGACTTGACAGCCATCGCATCTCTTGAAGCCGATTTCATACTagATATCTGTGACAACCTCCACCTGCAGTCAATCCCACCAAACGCCTTCATTGGAATGACAACTGAAGACACAACAATGAATCTGTATAACAATGGCTTCAGggaaatacacaaacatgccTTCAATGGGACAAAAATAGATAAACTAACCTTAAAGAACAACCGAAAGCTGCGAATAATCCACAGGGATGCTTTTATAGGAGCTTTTGGCCCAGCTGTATTagacGTGTCCTCCACTGCTCTGGAGACGTTGCCATCTCATGGCCTGCAGTCGGTGCTGATGCTGGTGGCTCGCTCAGCGTTTTCGCTAAAGAGATTGCCTCCTCTAAACAGTTTAGAGAGCTTAAGAGAGGCTCATCTCACCTACCCGAGCCACTGCTGCGCTCTACTCAGCTGGGACGCTCACAGGGAGTCTCCATCTTCAGCACAGAGAAATGGATCTTCATACTGTGAACACCAGAGTCCGTTAGATAAGGGCTCCGAAAAAGAGGTATTCTATTCTGACATGCTGGATCCACTTTCTGAAGCCAGCTTTGGCAATGTGGACTTTGAGTACCCGGACTTCTGTCAAATCAGACCAGCCCTCCAGTGCAGCCCAGAGGCAGACGCCTTCAACCCCTGTGAGGATATTGCTGGGTTTGGGTTCCTCCGTGTGGCCATCTGGTTCATCAACATCCTGGCTATTGCTGGCAACCTGACCGTGCTTCTTGTGTTATTCGCCAGCCGCTGCAAACTCACCGTGCCACGCTTCCTCATGTGTCACCTGGCCTTCGCCGACTTCTGCATTGGCGTGTATCTTCTCATGATCGCCATCGTGGACCTGAGGACACGCGGCTACTATAGCCAGCATGCCATCGAATGGCAGACAGGAGTGGGCTGCAGCATTGCAGGCTTTCTATCTGTCTTTGGCGGAGAACTGTCCATCTACACACTGTCTACGATCACCATAGAACGCTGGTACACCATCACCCACGCTATGCAGCTAGAGCGCCGGCTTGCTCTGCCCCAAGCTGCTGCAATAATGGCTGCTGGCTGGCTGCTCTGCCTGGGCATGGCACTACTTCCACTCGTGGGCATAAGTAGTTATAGCAAAGTCAGCATGTGTCTGCCCATGGACATTGAAACCCCTCTGGCCCAGGCTTATGTCATTCTTCTGCTGCTTTTCAATGTGGGGGCTTTTCTGGTGATTTGTGGTTGTTATGTGCGGATCTACATGGTTGTGCGCCACCCTGAAGTGCCTGGCCGTGCTGCTGATGCCAAAATCGCCAAGCGCATGGCCGTGCTCATCTTCACCGACTTCCTTTGCATGGCGCCAATCTCTTTCTTTGCCATCTCAGCTGCCTTTAAGGTGCCCCTCATCACAGTCACCAACTCCAAGATCCTGCTGGTGCTCTTCTATCCTATCAACTCCTGTGCCAACCCTTTCCTCTATGCCATCTTCACCAAGGCCTTCAGGAAAGACACCTGCATTCTGCTAAGCTCCATGGGCTGCTGTGAGAGCAAAGCCAACATGTACCGCATGAAGACCTACTGCTCAGAGAACACTGTAAAAATGATGAGTTGCTCAGTCGGCAAGGGCTCTCACACTGCCATGTGGCTGTCCACCTGTCCTCAACAGAAGTGCCAGCTGCAGATAGAGGGGTTACAGAAAGCCAGCTGTGGAGAACATCTCACATAACACATTCTGGCTGCTTGTCTGAGAGCTCTTATCTTTTTTCATTACTGTGGAATGTTGTATGGTGTGTTATGTTAGCCGTGTCCCTAAAATTTGACTCTCACTCAGGTAGCGGAGGAGTTCTTTCAGAGGGAAtttgtgaaattattttatcTCATATAAagaggtttatttttttctgaaaaagaaTGATTTGTCCCATGAGAAACACTTTCTCATTCTGAGTTTATTCATACCCTTGATAGAGGAGTAGACAACAGGGGCTGATAGACTCGGACAGCCTGGATTGGGgctacagagaaagaaaaatgaggaAACTGATTTGTCCTCATACGTCACATTACAATTCGTTCTTTCCAtccattttacactttttaccTGCGAAGTGATCATCACTGCCTAGTTCTCAGATATAAGTAGGAACATCACAGACTGGACTCAGAGCACCCTGAATAGATCCTTCCCCTCTATCCTTACTATGTCTTTTGTATGTTTGGTGGTGTTATTTTTGTCAAACAAATTAGGTTTTGTATCATTATGATGGTTTTTACTGTGAAATCACCTGCATCTCAAGGATCTCGTCTTATCTCTGAGAGCACAACATAACCTACATCGGTCGTCAAAGAGGTCAGAGGGTGACGACTGTGTGTTCTTTCGCTAACCttgttttatgaacataatataACACGTCAGACAGCCTTACTATTCAAACACGCTGAGTGTAAGATTAATAGTTTTCTAGGAGAAATTGCGACATATTGCGGACAATAAACGAACTTCAGGTTTTGGAAAGAACGGTTGCtgaaaatcctgaaaaaaaaaaaatcgagcttggtctga

Function

GO:

id name namespace
GO:0042700 luteinizing hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004964 luteinizing hormone receptor activity molecular_function

KEGG:

id description
K04248 LHCGR; lutropin-choriogonadotropic hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62330 lncRNA downstream 33951 25736578 ~ 25738936 (-) True G52716
TU62328 lncRNA downstream 42017 25730445 ~ 25730870 (-) True G52714
TU62152 lncRNA downstream 97571 25675076 ~ 25675316 (-) True G52564
TU62139 lncRNA downstream 100897 25669966 ~ 25671990 (-) True G52555
TU62095 lncRNA downstream 177980 25594236 ~ 25594907 (-) True G52532
TU62375 lncRNA upstream 51612 25843012 ~ 25846113 (-) False G52759
TU62373 lncRNA upstream 51885 25843285 ~ 25846892 (-) True G52759
TU62388 lncRNA upstream 74486 25865886 ~ 25866087 (-) True G52771
TU62392 lncRNA upstream 98108 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA upstream 124062 25915462 ~ 25916951 (-) True G52792
XM_034302898.1 mRNA downstream 2841 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA downstream 2843 25750053 ~ 25770044 (-) False mertka
XM_026939162.2 mRNA downstream 75036 25685684 ~ 25697851 (-) True LOC113541965
XM_026939496.2 mRNA downstream 268131 25494676 ~ 25504756 (-) True msh6
XM_026939333.2 mRNA downstream 442685 25308306 ~ 25330202 (-) True dnajc12
XM_034302838.1 mRNA upstream 131630 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA upstream 131630 25923030 ~ 25966974 (-) True anapc1
XM_026939525.2 mRNA upstream 210030 26001430 ~ 26006094 (-) False LOC113542170
XM_026939524.2 mRNA upstream 210030 26001430 ~ 26004309 (-) False LOC113542170
XM_026939523.2 mRNA upstream 211739 26003139 ~ 26011780 (-) True LOC113542170
XR_004577835.1 other downstream 1037000 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1121040 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1121040 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1732787 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 2318670 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 118618 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 1746376 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2641820 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3410532 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3888011 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile