RNA id: XM_026939302.2


Basic Information

Item Value
RNA id XM_026939302.2
length 5186
RNA type mRNA
GC content 0.47
exon number 8
gene id si:dkey-157l19.2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33610457 ~ 33644218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTACCTCACAGGTATCTCAGCCCGCGCACAgactcacagtgtgtgtgagagagagactatgagtgtgtgtgtgtgagtgtgtgtgttcaccatgCCAGAAAACCCTGACGGGTGAAGCGCGCgcactgtgcgtgtgtgtgtgtgtgtgtgtgaggataaAACGGCTGGATAAGACACATGGACTGCACACGAGTTTACTGAGAAGCGCATTGTGGGAAAAAAGGTGGCGTAATGTCGAGTGGGCGTGAGTCAGTGGGCGATTTGATTCCCCAGGATGTGCTGGAGGTTTTTGCCCATGAGCGACAGAGTAGGCGGGGCAAAAGATCCCGGAGGAGGAACACCATTGGCCGAGCGTTCAGCTGGTTAAAGGGCCGGCGCAGAAAAACTCTCCGTCCAAACAAAGACATAAACATCAACCTGCTCACACCTGGATTACCTGTGCCAATCCCACTGCCTTCAACCAACACAGccCCTAATGAGGCAGGTGAGACATCATGTCCTCTACAGCACTTCCAAGAGAATGTGTTTATTGAGGGAAATCGGCCAAAATATGTACAGGATCTGCACATGGAGGCTCAGGAGGGCCTGAAACTCCTGCAGCAAGATGAAAACAGAAACGGTGTGGACTATCAGGACGACCAGAGCGTCATTTCAACAGTGACGGCTCGTACGGACGACGATATGAGCTTCAGTGAACTGAGAATGTCCGAGTCTGAGAGTACTGCTGCTGATACGATCTCCACACGTTCCATCACTTCCTATCAGTCGTCACGTTCCGGACTCACACGCCAAGACTCCACCTTCAGGCCACTGAAAGAGGACAAGAAACACAAGAAGAGCAAATCGAAGGGGAAAAAGGCGGGTATGGTCAAAGGAATACCAAGACATGTACAGAAAGAACTTGGGCTTGACCGAGCTGCGTGGATAGCGTCCCAGTTCACTGATGCTCAGCTATCCAATGGAGGTGTGAGCATTTCCACCGTCATTCCCACTCTGGATAGCATATCCATCGCCTCGGTCCCAGACGGAGCAATAATGCACCTGCAGAACAGTCTTCAGGCTATAATGGAGGATAAAACACAGATCCCTCCACAGGAGGGACAGCAGGATGACCTCTCTCTACTCCAGCACCTGTTCCCACAGTCGTTTGATCCACAGAGACCGAATTCACTAGCTGTTCCCTGGATGACCACGTCAGGAACCTCTTCATCCAATCCAGTGATGTATGTCTCCCCTGAGGCCACGTACATGTCCAAGATCATCCCAAATGCGATACTGCCTCCATCTGTGGACGTGGTTGAACTCAGCCGCAACAGAAGTCGCAGTAGCGTTCGCATGGTGAGCAAGAGCAGCCTGGCATCGGCCAGTCCAGCTCCATCAAGAGCCTCATCCCGGGCATCCTCACGACTCTCCTCACGAGCTCCATCACTGATGTCCTCACGGGTCTCTTCTCGGGCTTCCACCTATCGGACTGCCAGCCTCTCGGAGTGCTCTGGCTGGAGCCGCTCAGGATCATCCGAGACACTCGTCTCGGATTCTTCCACCATTTCTAGCAGCAGCACTCCTCGAGTAGCCAGCAGGACAAGTCAGGCAGAGGACGATTCTAGACCTCCCATGGTCAGATATAATTCTGGTGCCCAAAATACCTCTGTTAAGCCTGTGCAGTTGAATGGTAACAGCCAACAAGAGGAAGCCTGGAAGAAGTCAGGCTCCACAGGTCCTTTTAATCGCAGCCTATCAGTGATGAAAAAGAGCAAGAAACCACCACCTCCCCCAAGTCGTTCATACTCGCTGCATTCACGTACGTATGCAAGAACCATAACTGAGCATAAGTCTTTGGAAAATGGGTCTCAGAAAGTGGAATCGCCGTACAGTGCCTATACAAGTCAGAACGGCAGCACAGCTGTTCCATCTAAAGGGAACTTGACCAGCCAGAGAGCAGTGTTGGCAGAGCTACAATTAAAGAAAGGCCTTCAAATGCAAAAAGGCAACATACCCTATTCACAAACtaatggaaggagtcaccagaATAATCTCAAGCATTTCCTACCATCTATTAAAAGTCTAACCGCTAATGGTAGAGTTGCTTCACCAGCTGTGACGACTCTTATGGCGCTCCTTGATGTTCCAGATCCTCCCAATGTTCtagctccacctccacctcctcctgagACATGGGCACACAATCAGCGCACCTTCGAACTACTGTGTGGACCTGGACCTGTCAACTTGGAGTGCTGGGCCCAAAAGAGAGGTCTGAAGTTTGAAGTTCCAATCCAGATGGCACAAGGGAAAATACCAGTGACAAGTCAAGCAACAAATGTAATGAAGGACAGTATAGTAGCACCTAAAATGCAAACTCAAGAAGCCGTGGCCTCAGACACGCAATATAGAACTACTCCTACACAGACGTCCGTTGATGTTCAGCCTCGTTATGGCAACACTCTGCCTTTACCCGGGCTTACCCATGTCCGTCCTTCCCCATCTCCTTCACCACCTCCTGAACATATACCTCCCCTGCCCCCAACAGACCAAGTAAAACCTCTAAAAGAAGATTCATCCGCCCAGTTCCAAGGATCTGATGAGATCATATGTCCCCCTCCACACCCTTTGTTCCCACCACCTCCGCCCCCTACAAAGGTACCCCCTCCACATCCGCCAGGTGGGCAGGATGAAACAGACTATCCATCTCTACCCATGCCATCTTCTCTAAGGTTTTTATTCAAAGTGCCCCCAGTGCTACAGGATGCACAGCCTTCAACATTAGAGGAAGCTGCATCTTCTCCAGCACAGAAAATCCCACCTTCTCCTCAAATGATCCCACCTGTTCCACCAATGATCCCACGTCCTCCACCAGCAATGCCACCTCCACCTCCGACATCAAGAACTCCTCCTCCGCCAGCGATCCCACCCCCTCCACCACTGATCCCTCCTTCTCCTAAGGCAGCACCTGCTCGTCCAAAGCAAACCCCACCAGACGTATCCTCAAAGCAAGCCCAAGTCACATCCACACCATTTAATGTTCCTACACCACCTCCATTACCCACAGATCTCAAGAAAGAAGTCAAAGCTATCACAGCTGAAAAACAGGAGAAACAGCCGCCTCCGCCGACCACCCACGCCGTTGCAACTACAGAGGAAAGTCCTACCCCGATGGTCACACCGTCCTTATTACAGAAAGTCCGTCTCAGGTCAATCAAATCCAACCTGAGCCAAGCTGAAACTCCTGGTGGACTTCAAAAAGCAAAGCATCAGACCAATCAAGAGGCACCCCAAAAGCCTAAAAGAAGATCTCTGATTCTGAATACATCCGATCCTGCCTCGCAATCGGCTACAGATCAGAAAACTGACAGTCTACCTGCAACTAATGTACAGGAAAATCAGGGCACTATTCCGCCATCAGACACCGAAACCAAAGCTGAACAGGTTTCATCGGATGTAAAACTTGAACCCAACAGCCAAGTCAGCGTCACAGACCAAAAAACTCAACAAGCAAGCACTGAACCAATCAAAGAGGCCGTGTCTGCTGAATCAGTACCCCAAATATCCAACAAAGTAGAACCTGAACCAAAGATCACAGTGCAGGAAATCCAAAATGAACCATCAACTACGCTAACCCCTGCTGAACCAAAAGATCAACTCTTTGCCAGTGACGTAAAAGAAATCCAAAACGAATCCAGTACAGCATTGGTAAAAGCAGAGCAAGAGGTTAAAATTCCAAGGCCCCAAACCTTAATACCCACATCTCCTAAAATCAATCCTGCTCAAAAAGTGCCTCCAGTTAGCATTCCTTCATCTTCCATGTCCCTCCAGGATGCCATTCGTCTGAAAACCGCTGCCATGTCGTCTACAGACAACCGAGCGAAGCGCCAGAGTCTGCTGCATTCCCCTCCGCTGTCCCCAGGGGCCATCTCGCCGACATCCACGGCAAACTTCATCTTCTCCAAAAGCACAAAGAAGGTGGTGATAGAAAAATCTCCTTCATCTCCAGAGTCCAAATCAGATCTGAGGAAGACGCTGGTGTACGAGTTGAAATCTGTTTCTCAAACATCCAAACCAGCCGCTGATCCCCAGAATATAAAAGCCAAAGTCCCTCCGCCAGTCGCTAAGAAGCCTAGTGCTAAGAGTGAAAATATTACCCATAATTCCTCAAAGATTAATGTGGACACTGAGCATGTGCAAACTGCTGGTCAGTGAGCACAGCCAGAGAAAAGAAGCAGGTGATGGACGATTCAAGGAATGGGACCCTGTTACTTTTGAAATTCATAGACTATAATTAATCCCCAGTGACATAAGGTGGTGAACAGGAAACCGAAGTGACAATGCTCTCTGAGAGAGAAAGGTCATTGCATGTTGAAGAAGTGGAGAAaagaatgatgaaataaaaagaaagaaattaaagaatgaggaagaggaagaaaaaagacagtAGATTTGGACGGAATTAATGCAGGAAGGAAAATTGAAGAGAAAAACATTGAGATTGAAAAGAAAAGGACAAAGCAAAGCAATCAGGAACACTTGCAGTGAGAAAGTATGAACTCATGAGAATTCTGTATTTGTAAAACAGtagaaaagctttttttttcctgcagaagGTGTTGGTCTTTCTGACGTTTAGAGAATTTATGATGATGTAAATAATTTGCGATGTACAGTTCTAACTTTCTGCCCAGAACAAATTTAAACAGGTCTATTGACTGGACCTTGATTAGTTATGTTCGATTTTAATATATGACATTTCTTTGTGCACTACTAGCCTGTATCTGGGGAATCACTGAATTAGGACCTTTATAATTTCCTTAATTTCTGctgtattattaacaacaatttCTCTAACTTATTGTTAAGAAAGAGCGATCTGATGTTCATCCAAACACTAGAGGTATCTCTGGTACAGTCTTGTTTAACTGCTTTTCTTTCGCTTATTGTCCTTGTTGTGATGTTTTGATTTCATAACTATCTGAGATATATTTACACAAAGCAGTACAGCATGTTTGAAATGTTATAATTAATAACAGGCATTTTTATGTAGCCTGCAATCGCTTTCGTTTAAAGAGCAGTATGTTAAATTttcgtttattttttttttaaagcaccttATAATCACCACTGACATGCACACTGGATTATAACCAGgtcttttttcaaaattttaaaacattaaacacagtcTGAAGTacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67542 lncRNA downstream 33610 33575286 ~ 33576847 (-) True G57356
TU67540 lncRNA downstream 38038 33571410 ~ 33572419 (-) True G57354
TU67519 lncRNA downstream 74482 33535478 ~ 33535975 (-) True G57335
TU67393 lncRNA downstream 89580 33480348 ~ 33520877 (-) False mycla
TU67554 lncRNA upstream 12776 33656994 ~ 33660021 (-) True G57368
TU67557 lncRNA upstream 12776 33656994 ~ 33660021 (-) False G57368
TU67569 lncRNA upstream 57002 33701220 ~ 33762528 (-) True G57379
TU67568 lncRNA upstream 58287 33702505 ~ 33704326 (-) True G57378
TU67589 lncRNA upstream 84038 33728256 ~ 33737485 (-) True G57390
XM_026939043.2 mRNA downstream 17650 33587893 ~ 33592807 (-) True LOC113541868
XM_026939489.2 mRNA downstream 40221 33562778 ~ 33570236 (-) False LOC113542143
XM_034302922.1 mRNA downstream 40263 33562778 ~ 33570194 (-) False LOC113542143
XM_034302923.1 mRNA downstream 40273 33562778 ~ 33570184 (-) False LOC113542143
XM_026939488.2 mRNA downstream 40274 33562778 ~ 33570183 (-) False LOC113542143
XM_034303179.1 mRNA upstream 1540 33645758 ~ 33656870 (-) True lgmn
XM_034302769.1 mRNA upstream 19596 33663814 ~ 33692927 (-) False pcnx1
XM_034302768.1 mRNA upstream 19596 33663814 ~ 33692926 (-) False pcnx1
XM_034302767.1 mRNA upstream 19596 33663814 ~ 33692926 (-) True pcnx1
XM_034303125.1 mRNA upstream 49983 33694201 ~ 33698292 (-) True med6
TU67534 other downstream 40239 33565536 ~ 33570218 (-) False LOC113542143
trnag-gcc_5 other downstream 80460 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67506 other downstream 148115 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 180688 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 265648 33340222 ~ 33344809 (-) False slc38a6

Expression Profile