RNA id: XM_034301294.1


Basic Information

Item Value
RNA id XM_034301294.1
length 1767
RNA type mRNA
GC content 0.53
exon number 2
gene id six1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33385114 ~ 33387819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaAGGGGGTCTCCGGTTTCAGGATCCGCCCTCCAGTGTAGAAGTGGATCTGCACACTTTCGTTCTGCTCAGTCTGCTCAGAGCAAATCGactaaaaatcacacacacacacacacacacacacacacacacacacacacacacacgcgcacacacacactacatcgaAGTCCAAAACCAGTTTAAATCAGCGATAGACATcactgcaggaggagaaaatCACTTCTAAGCGCTTGAAGGAGTTCAGAGGTTTCACATTCAGGAAGTTCATCATTTCTTCTAACCTAAAGACCCttcagttttctgtaaatattgtaaacgGAGATGTTTGGATAGTTGTGATGTTGGAAGAATGTCTAATTTAGGAGGAGCCTTGATTCTGAATCACATCATCCTGAAGGAATTGCTCATGTCTGGAGATTTGTATCATTTATCTGGAGCTCTAGTTgtccttttcttttaattttccaggatttttttcttcttagaaGCACTGATTTGGAAATTTGATTGCTCTTCTTGCTCTTCTCGGAATCTTTCTGACTGGCGCTCCACTGGAAACTCCAAATCCCCTGAAGGAACTGAGAGAGCTTTGTTCCAGTGTTTGGAGgagctgctgctctgctctgctggGGGAAAAGTCCAACGGTTCCTTCGCCTCTGTTGAGAAGAACAGCTTCATGTTCTGGAGCTTGTGGGTTTGTGAAGATCTGCCCAATTCGGAGTCACTGATCTTCTCAGGGTCTCAGAGGAGCTTCGGTTTTGGGGATGGTTATCGTACCGCGGTTGGATATCGCGCTGTAGAGTAGAGTATCATCACCACGATGTCGACTTCACCGAGCTTCGGCTTCACGCAGGAGCaggtggcgtgtgtgtgtgaggtcctTCAGCAGGGCGGAGATCTCGAGCGACTCGGTCGCTTCCTGTGGTCGCTTCCGGCGTGCGACCGCCTGCACAAGAACGAGTCGGTGCTCCAGGCCAAAGCGGCGGTGGCTTTCCACCGAGGAGACTTCCGCGAGCTCTACCGGATCCTCGAGAGCCACCAGTTCTCCGCGCAGAACCACGCCGGCCTGCAGCAGCTGTGGCTCAGGGCGCACTACGCGGAGGCGGAGAGGCTGCGCGGCCGCCCGCTCGGGGCCGTGGGGAAGTACCGCGTGCGACGGAAGTTCCCGCTGCCGCGCACCATCTGGGACGGAGAAGAGACGAGCTACTGCTTCAAGGAGAAGTCGCGCTCCGTGCTGCGGGACTGGTACACACACAACCCCTACCCGTCCCCGCGAGAGAAGCGGCAGCTGGCCGACGCCACCGGACTGACCACCACACAGGTCAGCAACTGGTTCAAGAACCGCAGACAGAGAGACCGAGCCGCCGAGGCCAAGGACAGTGGAGATGTCAGCACTAATAAACCTCTTCAGCTCTGCAGCtctgaggaggaggatgaagagcagCTCTCTCCACCaagaagccccgcccccagacCAACCCCAAACCCCGCCCATCGACTGCTTCACCAAGTCAACCCGAACCTGAGACCCACCAGGAACCTGAACCCGGACCCACACGGTACCCAGACCCGGTACACACACGAGCCGCTGCTAAGAGCCTTAACAGAGACCCTCAGTGAGCCGGGACCttaaagcttattattattattattagtattattattatgtattacagCTTGtgtcactgcaacacacacacacacacacacacacacacacacggtattTTGCACTCCAGTTGATTGTGTggattttataaaaa

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0048839 inner ear development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67396 lncRNA downstream 9613 33369860 ~ 33375501 (-) True G57224
TU67481 lncRNA downstream 20567 33363604 ~ 33364547 (-) True G57300
TU67475 lncRNA downstream 24423 33326080 ~ 33360691 (-) True G57294
TU67471 lncRNA downstream 79596 33303570 ~ 33305518 (-) True G57292
TU67469 lncRNA downstream 86801 33296819 ~ 33298313 (-) True G57290
TU67395 lncRNA upstream 22729 33410548 ~ 33411453 (-) True G57223
TU67500 lncRNA upstream 34005 33421824 ~ 33422474 (-) True G57317
TU67389 lncRNA upstream 77880 33465699 ~ 33467307 (-) True G57220
TU67393 lncRNA upstream 92529 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA upstream 131807 33519626 ~ 33520877 (-) False mycla
XM_026939307.2 mRNA downstream 23249 33357030 ~ 33361865 (-) True dhrs7
XM_034302705.1 mRNA downstream 40278 33337403 ~ 33344836 (-) True slc38a6
XM_034301269.1 mRNA downstream 48319 33329005 ~ 33336795 (-) True prkcha
XM_026939217.2 mRNA downstream 63451 33306312 ~ 33321663 (-) True hif1aa
XM_026939447.2 mRNA downstream 91771 33286801 ~ 33293343 (-) True LOC113542112
XM_026939485.2 mRNA upstream 1674 33389493 ~ 33403724 (-) True six4a
XM_034302706.1 mRNA upstream 35845 33423664 ~ 33442815 (-) True lrrc9
XM_034302075.1 mRNA upstream 80204 33468023 ~ 33484082 (-) False tdrd9
XM_034302071.1 mRNA upstream 80204 33468023 ~ 33484082 (-) True tdrd9
XM_034302762.1 mRNA upstream 97194 33485013 ~ 33505325 (-) False kif15
TU67383 other downstream 40305 33340222 ~ 33344809 (-) False slc38a6
TU67373 other downstream 285542 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 656373 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 723552 32653836 ~ 32661562 (-) True slc66a3
XR_004577854.1 other downstream 995970 32374346 ~ 32389144 (-) False ndufaf1
TU67416 other upstream 35850 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 67403 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 142108 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 177717 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile