RNA id: XM_026939315.2


Basic Information

Item Value
RNA id XM_026939315.2
length 1934
RNA type mRNA
GC content 0.46
exon number 3
gene id mad2l1bp
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28509055 ~ 28516011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttgtaattatttttgacTGAAGATTTTATTTCTAGCTAGAAATGACTGGTGTAGTCACCGAATATTCGctctgtttgtatttttccaCCTTGGCTAATGGAGGTACTAGCCGCTAGCATATACCAGTAACCTGGCAACGCACGCAGACGTATGTGAAGCCCTTACAAGATTTATGAGGCAACGTATAGGCAGTAGAGGGCTCCctgtttgggacacagcctatAGGTCTACGATTACGCCACTCCAAAAAGCACTTCCGGCTTCTCGTTCCCATGATGCATCAGCGGGGGAAATTCAATTCAAACACTTGGAGACATGGGTGAGGAGGGACTCGGAAAAGAAGGGGAAGTAAGTAAAATTATGACTGTTATCACAAAGCCCGAGTGTTTAGTGGATAGTGGCGGTGAAGTTGAGGTGGAGCAGTGTGATGGACAGAGCAGAGACACGGCGAGTCAACagcacacacagggagagacgGAGAACTCGAGCGGGCTGTGTCCGGTTCTCTCGGTCAGCACTGCTGCTTTTAGTGAAGCTCAGCGccatacaacaacaacaacaacaacaacaacagctgcTGGGAATAAAGACGTGTCTGAAAAGGCACCAAATGTTAGAGCAGAATCACTAAACGGAGAGGAAGCGAAGGAAAATAGAGATAGCACCGCAGCACCAGAGAGCCAGCAGGACAACAGTAAGTGTAAAAGTTTCCTACCTGAACACGTGACCGGACAGCAGGAGTCTGACTATAGCCAAGTGTCTGTGCAACAGCCTGTGTgcgatgaggatgatgaggagatCGCGAGGAGAGCCCGAGAGGAAGGCCGCGTGGACGTGGTATTTCAAGGGAGCGTGACACAGGACGGCTGTTGCAGATTCGTCTGTGAGCTCCTCAAGTGTGTCCTGTACCAGAGACAACAGCTGCCCATGACCTATGACCAGATGGTCTTCTTCCAAAAGCAGCAGCTCGCCACCAcacagCTGGACGAAGGAGCAGTTAGGAAATCCATCAAGCCATCAGGAGACTCAACTTGGCAGCGGTGCCAGCGGACACTGCAAGAGCTGGATGAGGTGCTGGGCCACATGGAGGTGCTGTTCTCCCTCAGTTACGTCCCCCGTGTGCTCTTCATGCTGGGAAGCTCTGGGATTCTTCCCACAGAGTTATACGAGATCAACATGGAGGCTTTGGTGCAGGGAGGCAGCGACAGAAGTTTGAGAACTTCCCTGTGTTTGAGGCGGCTGTTTCGCACCCTTTTCGTGGCGGATTTGCTTTCTGACGTTAAGCCAGTGCGCCTCATGGGCACCACAGTCATGGCGCTCGCCCATCGGGACTGTGGTGTAGAATGGTTCAAGCCGAAAGTCAACTTCAGAGTTCCCACAAGGGTAAAGAGACAGGTGATATCATTAGCCAGTGGCACTTCTGGAAGTGGCCAAAGAAAGGCGGACACTAGCGATTGGGATGATTATATATGGTTTCAGACACCTGTGACTATTAAGGGTTTCTGTAAATGACACAGTCCTAAAGGCAGGTAAAAGCATGGTGCTGAAATTTCAGGGATTGATAAATTATACCTGTTGAAAACCTCAAAACTGAGTCATTTTTAGTTTCATTCATGAAttgatttttaatgaaatgccATTAATTCACATATGATGATTGTTAAGCAGTTAATATCAACATAACTGACATGCTTCCCTTTCAGAATTCAAACTCGATTTTATTATGGAGAAACAACTAACTTTTATGACAGAGaatacattttcaacatgtcTGTTATCTCATTGAGAACACAGTCAGATTGTGTGATCAACATAAGAGCAAGTCTAAATTATATGAATACCTGAAGTTTTACTTTTATACCATgtagttatattttatacaaggTGACAAGATTTGCAACTATTctattaaaatgtttcatgacAAACTA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63419 lncRNA upstream 12449 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 25157 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 41072 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 60191 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 71218 28436980 ~ 28437837 (+) True G53629
TU64516 lncRNA downstream 602055 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 608482 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 935885 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 1164515 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 1167998 29684009 ~ 29684999 (+) False G54958
XM_026939246.2 mRNA upstream 14369 28487543 ~ 28494686 (+) False LOC113542011
XM_026939247.2 mRNA upstream 16873 28466088 ~ 28492182 (+) False LOC113542011
XM_026939245.2 mRNA upstream 16873 28487543 ~ 28492182 (+) False LOC113542011
XM_034302604.1 mRNA upstream 16873 28487609 ~ 28492182 (+) False LOC113542011
XM_034302592.1 mRNA upstream 21671 28465659 ~ 28487384 (+) False LOC113542012
XM_034302906.1 mRNA downstream 6335 28522346 ~ 29072960 (+) False macrod2
XM_034302907.1 mRNA downstream 6335 28522346 ~ 29072960 (+) False macrod2
XM_026939314.2 mRNA downstream 6336 28522347 ~ 29072960 (+) False macrod2
XM_026939313.2 mRNA downstream 6337 28522348 ~ 29072960 (+) True macrod2
XM_026939137.2 mRNA downstream 568635 29084646 ~ 29093239 (+) True glo1
TU63410 other upstream 60744 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1301810 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1302660 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1302685 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1516344 26985978 ~ 26992711 (+) True G53328
trnav-cac other downstream 589433 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 591831 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1196247 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1421537 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1838311 30354322 ~ 30358454 (+) False mgst3b

Expression Profile