RNA id: XM_026939320.2


Basic Information

Item Value
RNA id XM_026939320.2
length 2207
RNA type mRNA
GC content 0.51
exon number 11
gene id oit3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28314713 ~ 28330532 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGACACGGACCCATCCCTCATGTACACACTCCAAATTTAAAGACCCTGCCCTTTTCCACAGTTCTCACAACAGACCCCCGTGCAATCTCGTGTTAGACTGAAGTCACCATGCCGTTGACTTTGCTGATGGATGTCCTCATAGCTCTGTCGGCCGTCCAGACTGTGGCCACTGATCAGATTACAGCTCCAGATCCCTGCTCGGCCTACATCAGTCTGAATGAGCCCTGGAGGAATACTGACTACCATGTCAACAACTCAGCTGGTGTGCCCTTGTGTGACCGCCATGTAGCTGGTGAGTGGTACCGCTTCACTGGTATGGCCGGTGATGCCATGCCAAATTTTTGCATCGAGGAGAACCACTGTGGCACTCATGCACCGATCTGGCTCAACGGCACCCACCCACTGCCTTCTGATGGCATCGTCACATTGCCTACATGTGCAAGCTTCAATGATGACTGCTGCCATTGGCGTGGGACGGTGGATGTGAAAGCTTGTCCCAGGGGTTACTATGTATACCGCCTGCCGCGCCCTTCAGTATGCTTCCACGTGTACTGTGGTCATTTCTATGACATCTGTGATGAGGTGGAGTGCACTGGTCCAGACTGTCCACTGCAACTAGAATGCCATTGTCCTGCTGGGACTGTTCTGGGGCCAGACTCCCAGACTTGTCTGGATATAAATGAGTGTGAGAGTAACAATGGTGGATGTGCTTAAATGTGTATGAACACCAAGGGCTCACGACGGTGTGAGTGTGGCCCAGGCCGAGTACTGGATGCCGATGGCCGGACCTGCAATGAGATTGCAGGCTGCCACAATGTGAATGGAGGCTGTAGCCATGGCTGCTCATCAGAGGATGACTCGTATTACTGTCATTGTCCACGAGGTCTAACACTGGGGAAGGACGAGCGAAGCTGTCAGGTGCCTGTGCATTGCGATCCCAGCGCTATTGATGTGTCTGTTCCCAAAGACCTTGTGGGTGGCCTGGAGCTCTTTTTGTCAAATTCCTCATGTCGCGGAGTTTCTAATGGCACTCACATCAACCTTCATTTCAGCCTGAAGACCTGCGGCACCGTGGTCAAGGTAATTGATGGCAAAATTACTGGCACAAATCTGGTCACCGGACTGCCAAAGTCAAGTCCGACCAGCAGTGGAGATCTAATTGTACGCACCAGCAAGCTTTTGCTGCCCATAACTTGTGAGTTCCCGGGTCACTATGATGTATCAGATGGTTACCTTCCCAGTGTACGCAGCTCTGCACTGGAGCTGTCAGCACACAGTGAAGGCATCTTCCCCTTCACACTGGAGCTGTTTAAGAGCGCAGAGTTCTCCGAGCCGTACAACAGTCCTCCTCAGCTGCGTTTACGTGATGCGCTGTACTTTGGCGTGGAGCCACGTGAGCATGTGGAGGGCCTTGCTGCACTTGTGGAGACCTGCTTCGCCACGCCTGGCCCCAAAGCTGAACAAGTCCTCAAATATTACCTCATTAAAGACGGcTGTATTTCGGATGAGACAGTACGCCAGCTCTCAGCTAAAGATCAGCTCTCCAAACACTACCAGGTTCCTGTCTTCAAGTTCATTGGCAGTGACAACAGGGAGGTGTACCTGCATTGCCGGGTGCTGGTGTGTGGTGAAGGAGAGTCACGCTGCACGCAGGGCTGTCGCAGACGTCTGAGGCGAGACCTCTGGAATGAGCAGCACCAGGAGAAACGCACACTAACTGGAGGACCCATTCTCATTCTGCCAGATCcAGCTCTCCAGGCTTCCTGTTCCAGTAATAACACTCGCTTTGCTGCTTCCTTTAACTCTGTTGCTTCTGTGGAGACTCCGAAGGGGGTACATGCAGACTAAACACAGtgTCTCACCTTGATTTCTCGGAGGACGCTGCCGAATGCAGGTGAGCCGTGACACACGTCATCAAAGACATCACTAAATACTGTGAGGCGCTCTCTGCAGGGACCTCCGCTGGCAGGAAGTTTCCTCAgtgcctaacacacacacacattaacaattTCCTCTGTCGGAAATATGCATCAGTCTCTTGCTGTCCTCTGAGATGACTGAGTACAGTATAATTTTGTCTGCGTACTGAACCACAGACGTTAGCCGAGCCTGGAACACATCAGTCAAGCTCATGAGATGACAGTGCCCCCAATATGGCTtctgagtgtatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K24431 OPA3; oncoprotein-induced transcript 3 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64079 lncRNA downstream 584 28312946 ~ 28314129 (-) True G54301
TU64048 lncRNA downstream 13194 28298920 ~ 28301519 (-) True G54270
TU64049 lncRNA downstream 16944 28295936 ~ 28297769 (-) True G54271
TU64076 lncRNA downstream 24234 28290038 ~ 28290479 (-) True G54298
TU64073 lncRNA downstream 33213 28278492 ~ 28281500 (-) True G54295
TU64083 lncRNA upstream 25894 28356426 ~ 28362243 (-) True G54305
TU64084 lncRNA upstream 35771 28366303 ~ 28366716 (-) True G54306
TU64051 lncRNA upstream 96921 28427453 ~ 28429340 (-) True G54273
TU64099 lncRNA upstream 140359 28470891 ~ 28471098 (-) True G54320
TU64103 lncRNA upstream 154450 28484982 ~ 28485245 (-) True G54324
XM_026939399.2 mRNA downstream 215257 28067773 ~ 28099456 (-) True myom2b
XM_034303053.1 mRNA downstream 216793 28067773 ~ 28097920 (-) False myom2b
XM_034302635.1 mRNA downstream 716666 27562257 ~ 27598047 (-) False mcph1
XM_026939280.2 mRNA downstream 716761 27562257 ~ 27597952 (-) False mcph1
XM_026939283.2 mRNA downstream 717069 27562257 ~ 27597644 (-) False mcph1
XM_026939354.2 mRNA upstream 3093 28333625 ~ 28388691 (-) True mcu
XM_026939481.2 mRNA upstream 106473 28437005 ~ 28446340 (-) True nolc1
XM_026939250.2 mRNA upstream 138424 28468956 ~ 28485759 (-) True LOC113542013
XM_034302605.1 mRNA upstream 138424 28468956 ~ 28476243 (-) False LOC113542013
XM_026939251.2 mRNA upstream 164110 28494642 ~ 28496602 (-) True LOC113542015
TU63465 other downstream 773414 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 2404594 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 3578826 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 3662866 24453119 ~ 24651847 (-) False lyst
TU64047 other upstream 102688 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 871400 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 1348879 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 1781299 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 1781502 30112034 ~ 30122822 (-) False G55209

Expression Profile