RNA id: XM_026939325.2


Basic Information

Item Value
RNA id XM_026939325.2
length 3750
RNA type mRNA
GC content 0.44
exon number 12
gene id gtpbp2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27507235 ~ 27517687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCGAAAAAGGCGCCTtcaaaaaatagcaaaaaggCAAAGAGCCGCTCTGCCCGATATCCCAAAACGAGCAATAACCCACCCTATCTACCTCCAGAGgCTGAAGAGGGAAATATCGAGTACAAGTTTTATGGCGTTATGGCTCTGTGGCTCAGCTGAAGCTGGTGAACCCCACGCAGTATCGCTTCGAGCACCTGGCCACACAGATGAAATGGAGGCTGCAGGAAGGCAGGGGAGAGGCTGTGTATCAAATCGGTGTAGAAGACAATGGCTTGCTGGTTGGATTATCCGAGGCAGATATGAGAGCCTCGCTCCGGACCCTCCACATGATGGCTGAGAAGGTGGGTGCTGACATTACAGTTCTCAGAGAGAGGGAAGTGGATTATGACTCGGAGGAGCCACGGAAAATCGCAGAAGTCCTCGTCAGGAAAGTGCCAGATGACCAGCAGTTCCTGGACCTACGGGTAGCTGTGCTAGGTAACGTGGACTCGGGGAAGTCCACTCTCCTTGGTGTGCTCACTCAAGGGGAGCTAGACAATGGCAGGGGCAGAGCACGACTAAACCTCTTTAGGCATCTTCATGAGATTCAGACAGGAAGGACCTCCAGTATCAGCTTTGAGATCCTGGGCTTTAACAGCAAAGGAGAGGTGGTGAATTACAGCGAGTCACGGACGGCGGAGGAAATTTGCGAGAGTGCCTCTAAAATGATAACTTTCATAGACTTGGCTGGTCATCATAAATATCTGAAGACTACCATCTTTGGCCTCACCAGCTATTGCCCTGACTTTGCCATGCTTGTGGTCAGTGCAAACACTGGCATTGTGGGCACCACACGGGAGCACCTTGGGCTGGCCATGGCTCTGAAGGTGCCAATCTTTATCGTGGTCAGTAAGGTGGACCTGTGCACAAAAGCCACGGTGGAGAGAACTGTACGGCAGCTGGAGCGCGTCCTCAAGCAGCCTGGCTGCAACAAAATTCCACTGGTGGTGAACAGTGAAGACGACGCAGTCACTGCAGCCCAGCAGTTTGCACAGTCCCCCAGCATCACGCCAATCTTCACATTGTCCAGCGTATCGGGGGAGAACCTAGAGCTGCTCAAAGTGTTCTTGAACATCCTGCCTCCCCTCAGCAACAGCAAAGAGCAGGAGGAGCTCATGCAGCAACTCACCGAGTTCCAGGTTGATGAGATTTATACAGTGCCTGATGTCGGGACTGTAGTAGGTGGAACGCTTTACAGTGGTATCTGCCGAGAGGGGGAGCAGTTAGCGGTAGGGCCAATGGATGACGGCCAGTTCTGCGATCTCACCGTGTGCAGCATCCAGAGAAACCGATCAGCATGCAGAGTGCTTCGAGCAGGACAGGCAGCTACACTGGCACTGGGCGAGTTCGACCGCTCGTTGTTACGAAAgGGAATGGTGATGGTGAGTCCGGAGATGAATCCCACTATCTGCTGGATGTTTGAAGCTGAGATTGTACTGCTCTTCCATGCTAAGACTTTCCACAAAGGCTTCCAGGTGACTGTGCACGTGGGCAACGTGAGACAGACTGCTACAGTGGAGGCTTTGCAAGGCAAGGAGGAGCTGCGCACAGGTGAGAAAGCAGTGGCACGTTTCAAATTCATCAAGCATCCAGAGTACCTCAAAGTGGGAGCCAAGCTGCTTTTTAGACATGGAGTTACCAAAGGCATTGGACAAGTAACCAAACTACAGCCCTTGTCCCAGTACCACCACCAAGCATAGTCTCATTCTTACTCTTGACCTCTCTCTGtgtcggtctctctctctctctgtctgttctgtccATCTTTCTTGCTGTCTCTCCCAGCTCAGAGGATATAAGCACAGCCTACCAGAATACACCAGTCCTTCTGTCATcctcagagtttttttttttttttaacctctcaCAGCCCCAATATTATTTACACTTGCTTTTCTTTTACCAAAGCCTTTCTGCCACTAATCTCAAGCCTTTTTTATAGAACCGTTTTCTATAAAATATTAGTctggtttataatttttttaatgttttttaaatatggcaATAGGAATATAAGAAGTGAGCTGGTCTGATTTTAACCGTGAATGCAGTGGTCACCATATCAAGGTTGGATTTGAAGTAAAAGTCTAGTAGCTGTTCTTGTCAATATGGGTGGACACATAgccatttggatttttttaaagcgaaaATCAAACCAACTGACTGGCTAAAAGGTAAATGATACCTGAACCTTAATGCTGCCCATGTTAGTTACCTCATCATCATGGTTTGTTTGACTTTTCCCTTTAAAGAGTCCTAATGAGCTCCTTGCACAAACAGTTCACACTAGTTTGCCACTATATACAAGCAGAGTAAGACAACGAGCATGCTTTGTCACCCCTTCAGAATTTAGTCCCAGCCCTAatttcacactcactcacacacagacaagttGCTCCAGGTGTGATGGAACTAAACTCTGCAGCATGGTAGATCTCCAGGAAAGGCATTGGAAACTtctacattaatattaaaaggCAACAGACTTTAAGATTTTGGGAGGCATTCTGAATGAGAGTTACTTCTCATAGGTATCCAAGTCTAATCATCTAGCCAATGTCTTCACAAGTGTACTGAAGTGTAAGGTGTTAAGTATTTTAATGGCAGCTATAATGGTGACTGAGTTTTAGCACTATCTTGTCAaccaagtttaaaaatgaaatgccagcactgttaGCAAAAACCTACTTAAACCTGCTAACAGTCTCTGTTGTCTTTTGTAAAAGGATGACAGTTATGAAATGAGGCACTTTAATGTAGTGGCAGGCTCAGGCTTTACAGGGTTGAATGTTTCAGCTCAATGAGACACACTGAAGATGTCTCACACTGCCTTACCATCATGTGGTTCTCTGTGCTTCACTGTTGCTGAATACTACTTCATTTTACAATGAGTTTCTTCCTGTTTGTAGTAATGTCGATTATGTTGATATTCTTGCCTACACTCAAGTGCTTTAGTTGCTCAGGAAGTGTTGCATGTTCCTCCTTCACATTGACCCTAGCTTAAGAGAAGTAGATGTCAACTTGAGCAGCTTTGATGGATGAAAACCCGTCTCCTTCGAAGCATCTCCGCTGCTCTTTTACTGATTATGCAAAATGTACTGCAGGCCTCAGACGGGTTTTTTTCTGATCTGTTATGTCACTGATTTATCTTGTTAACTATTTTATCATTTCCTTTAGGTTACTGATATCACAATGTTAAATCGAGGTGCTCTTTTGTAGTGCCTTGTGTCCAACAAACTCCTTTGCAAAGTTGGATGTCGAACCCCACACAGTTTTGTAGCTTTTTGAACTTGGTGCTAAACCTTTACTACTAAGAACATAAAGAGGTTTATACATTAGTTTCTATGTATCTGTCTACAACAACCAGTTTATGCATGTCGAGTTCTCTTAGGTACCTAAGGCACATGTTAACGCCTTTAGTATGTCTTTCATTGTGTTTCTTGTGCAATTTTAGAggtaaggaaaaaaatgcatttaaaccaaaatgggaaaatgtaataaagtttactttagttatttttatttttatccagtCATCTATTTTTGACACCCTATtaattgatgtctttttttctggGCTTGCTATGAAACGAGATGCTGGGGAAAAAATTGTTTAGGGTTTCTTCCATCTTATTTCTTAAagaattttagaattttagcTTTACTTTTTGGTGAATTGATGTAAAAAATAAGTTTGTATATttatggtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577721.1 lncRNA upstream 151885 27348910 ~ 27355673 (+) True LOC113541894
TU63096 lncRNA upstream 166462 27337047 ~ 27341096 (+) True G53402
XR_004577892.1 lncRNA upstream 234381 27261131 ~ 27273177 (+) True LOC117596902
TU63030 lncRNA upstream 263400 27242955 ~ 27244158 (+) True G53340
TU63002 lncRNA upstream 385619 27111544 ~ 27121939 (+) True G53312
XR_003404268.2 lncRNA downstream 10178 27527865 ~ 27530466 (+) False LOC113542161
XR_003404267.2 lncRNA downstream 10419 27528106 ~ 27530466 (+) True LOC113542161
TU63021 lncRNA downstream 42485 27560172 ~ 27562940 (+) True G53331
TU63329 lncRNA downstream 546956 28064643 ~ 28067481 (+) True G53614
TU63332 lncRNA downstream 582926 28100613 ~ 28100831 (+) True G53616
XM_026939450.2 mRNA upstream 71569 27425842 ~ 27435989 (+) True LOC113542114
XM_026939508.2 mRNA upstream 114362 27386257 ~ 27393196 (+) True plek
XM_026939076.2 mRNA upstream 142087 27360842 ~ 27365471 (+) True pno1
XM_026939044.2 mRNA upstream 159636 27342921 ~ 27347922 (+) True psmb1
XM_026939413.2 mRNA upstream 179903 27318008 ~ 27327655 (+) True tnfaip3
XM_026939226.2 mRNA downstream 15032 27532719 ~ 27537671 (+) True gsta.1
XM_034302633.1 mRNA downstream 80427 27598114 ~ 27997810 (+) True csmd1a
XM_026939513.2 mRNA downstream 583685 28101372 ~ 28107827 (+) True rnaset2
XM_026939545.2 mRNA downstream 599073 28116760 ~ 28148448 (+) True rps6ka2
XM_034302897.1 mRNA downstream 603759 28121446 ~ 28148448 (+) False rps6ka2
XR_003404257.2 other upstream 300313 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 301163 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 301188 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 514847 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3449671 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 929690 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1587757 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1590155 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2194571 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2419861 29937548 ~ 29941181 (+) True G55091

Expression Profile