RNA id: XM_026939331.2


Basic Information

Item Value
RNA id XM_026939331.2
length 1637
RNA type mRNA
GC content 0.46
exon number 14
gene id fancl
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14035638 ~ 14056463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgtgtgatgacgTAGCGCTGATTTGATTCCGTTTTGCGGGAAGCAGCTGCAGTAACTTTTGGTTTCACACACACTAGAGAAATAAACCTTAAACCTGTAGAATATCGGAACTGAACGATATTTCTAAGTGTGTCGGTctctgtttgcttgtttaaaGAGTACTATGTGTAAAAGTCGGAGTGGAAATGACTGAATTAGCTAGCCGGCTAGTTTAGCACTAGCAGTACAGTAGTAGtgtttagcttgctagctttCTCACAGGAGGCTGTCATACAGTGGCGCAGTATCACTTCATTCAcctggttgtttgtttgtttgtttgtttgttttacacaaTGGCTGAAAGCTTGCTTAAAGAGTGTCCTTTGTTAGTTGCGCTGGATAAAGAGAAAACTATTTACGATGGCTTTATCTCAGTACAGGAAAGAGACTTCAGGATAAGAATAACTCTGCCTCCAGACCATCAGCTGAAACAGgcaaaATTGCACTGCTGCTGGGAACTGAAACGGCTGCTGAAAAACCACCAGCACATCCTAAAACAGAGGTTACAACATTCTTCAGATCTGGTCGGGTTTATTTTGGAGCTGAGGACCGTTCTGGAAGTAGCACTGAAGAGCCAGCCAGGCTGGCAGGCCATCCCACCACCTCAGTACTATTCACAGCTCATCACAGAGATAGAGAGTTTAGGATGGGATAAGCTAATCTTCATTGACACTGACTTCCACACTCTTAAGTTGAAGGCAGAGGACTCCTTTCATCGTCAGCATGTCTTTACAGTCAAGATTAAATCAAAGTACCCAGCAGAAGCTCCAGAATGCTCCGCAGACCTGCCTGTCCCACTGGTGATTACATGGACCCCACAGAGCAATTTAGCCCACATACATAGCCAGTTCCTGCTGATTGTGGAGGCTTTGGCTGAATTCTGGGCAGTGATGGATGAGATTGATGCGCACACCTGGGTGCTGGAACCTGAAAAACCTAGCAGAGCAGACACGATGAGACGGATCGCTATTGGAAACAACGTCTCCATAAAGGTTGAGATCGACCCCAGGCACCCGAAGATGTTGCCAGAATGCTGCCTGCTTGGAGCTGAGCATGTGGTAACCCCCCTGAGGAGCAAGCTGAACGCTAACATGCATTTATGGAACCCCGACTGCAGCGTCCTGCAGAACATGAAGGATGTTATGGAGATAGAATTCCCGTCACCTGCCACCCACGAAAAATCTAGTTTTAGTGTGGAGTGCGGCATCTGCTATTCATATCGGCTGGACTCTGCCATACCAGATCAGGTGTGCAACGATCCACGCTGTGGGCAGCCTTTTCATCAGGCCTGTCTCTATGAGTGGCTGAGAGGTTTGCCCACCAGTCGCCAGAGCTTCAACATTGTGTTTGGAGAATGTCCTTACTGCAGCAAGCCCATCACAGTGAAAATGGCCATACAAAAACCGTGACCACTCTGTAAAATGGCTGCTGTGTTTCAGAAGGACAAGAAATTCGTTCTTAATACTGGAATATGAAAACCAAACACCATGTGTTCAAAAGACAGTAAAAGCAACCAGAAAAAGGAAGAGTGCAACAGTAATGATGCATGCATAAATTTTACAGCTCCACTGAATAAAAGGCTTGTCTTCGGA

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54243 lncRNA upstream 139103 13894142 ~ 13896535 (+) True G45875
XR_004577873.1 lncRNA upstream 145789 13889279 ~ 13889849 (+) True LOC117596881
XR_003404657.2 lncRNA upstream 390300 13644120 ~ 13645338 (+) True LOC113545747
TU54050 lncRNA upstream 436623 13521839 ~ 13599015 (+) True G45712
TU54051 lncRNA upstream 440813 13522906 ~ 13594825 (+) True G45713
TU54552 lncRNA downstream 126528 14182991 ~ 14183193 (+) True G46175
TU54553 lncRNA downstream 126974 14183437 ~ 14183646 (+) True G46176
TU54602 lncRNA downstream 230187 14286650 ~ 14288287 (+) True G46217
TU54606 lncRNA downstream 230187 14286650 ~ 14288218 (+) False G46217
TU54604 lncRNA downstream 230955 14287418 ~ 14288218 (+) False G46217
XM_026941819.2 mRNA upstream 402160 13588316 ~ 13633478 (+) True bcl11aa
XM_026935703.2 mRNA upstream 534588 13498048 ~ 13501050 (+) True pcbd1
XM_026939104.2 mRNA upstream 605378 13419948 ~ 13430260 (+) True sec23ip
XM_026937959.2 mRNA upstream 630963 13385486 ~ 13404675 (+) True inpp5f
XM_026932061.2 mRNA upstream 652295 13376724 ~ 13383343 (+) True bag3
XM_026943791.2 mRNA downstream 137371 14193834 ~ 14197074 (+) True soul2
XM_034303068.1 mRNA downstream 156906 14213369 ~ 14286542 (+) False slc24a3
XM_026944022.2 mRNA downstream 156939 14213402 ~ 14286542 (+) True slc24a3
XM_026941983.2 mRNA downstream 232919 14289382 ~ 14292863 (+) True si:dkey-187a12.4
XM_026937917.2 mRNA downstream 239871 14296334 ~ 14328299 (+) True rin2
TU54033 other upstream 534592 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1002390 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1035676 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 1098836 12929559 ~ 12936802 (+) False spef1
XR_003404567.2 other downstream 156939 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 304904 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 1736965 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2014251 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 2014296 16070759 ~ 16071920 (+) False cxcl18a.1

Expression Profile