RNA id: XM_026939338.2


Basic Information

Item Value
RNA id XM_026939338.2
length 1913
RNA type mRNA
GC content 0.37
exon number 9
gene id cacul1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24416490 ~ 24440455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGATTTCTTAAACATATAGTTTAACATTTGATATGAAAACgtaaaatgtcatttctgcAGCTCGCCAGTAAAGGTGGGGTTGGGGTTTTAGAGATGCACGATGACCACAATCACAATTATCGTGAAAACCATggaaatgtatattatttaaacTGTAGCTCACCGATGCGGAGTGAAGCCAGTTGTATTCCAGccactgtgggtgtgtgggATTGTGCCGAAACTGCCACACACAACGATTCCGCTTCAGACTGCGAAGCTGATTGTTGTGGTCCATCTAAAGCGAGGAGCGTGACTTCTAATCCCTCTGAATTTATGAAATAAGAGCCAGtgtctcttctctactccagtcCCTCCAACTGCTTGGACGCCATGTTGTGAATGGAGCGTGATCATATGACCACATGACACAAACATCCAGTGATGAATTCAATGACAGCTGAGGACTACAGAGAAACCTACTGGCCGAGGCTGGAAAAAGCAGTTGAACAGCTGCTGACTCAAAGCCCAGTGAAATACACTTCTATCTCCTATGAACAGATTTACAGTCAtgtttataagtgtgtgtgccAGCAATACTCAGACCATCTCTACAGTGACTTGATATGGAAGATAACATCTCACTTACAGCAAGTGTGCTTAGAATTGCAAGACAGCCGACCTGAAAGTTTTGTTGAAAACTTCAATCTTGCTTTCACTCAATACATGGCTGCAATTGAGTGCATCATTCCTTTGTTCATTTATATGaacAAATTCTATATTGAAACTCAGCTGAACAGAGACTTGAAGGATGACCTCATGGACCTTTTCTCAGCTCATGTTGCAGAGAAACATATTAGTATGTTAATATCTCTTCTAAAGAAAGCTGAGGCCATGCCATTTCAAGTTAAACCATCAACTATGGCAAGTGTGGTAAAAGGCCTTTACTCTCTGCGACCAGACTGGGCTCAGCTAGCCCCTGCATTGTTTTCTAGATTTATTCCCCAAATTCACCCTCCTGTTTTGGAGTCTGATTTGCTGCGTTATGCATCTCAAGACCGGAAATTGCAAATGGAGCTTTCACTAAAAGGTTTTTCCAGGTGTGACCAGTCACGTAAAAGAGCATGTGAAGAATCCTGAAAAACCTGCTGGAAAACATGAAATAATACCCCACACAAGAAAGCTTCCATACTACAGATCAGAGACATAAGGACTAGACTACGTATGAACTgggaataattaaaaataaaaaaaaattttttttacaaaggtgCTATCTTCTATGGAGGATAAACCATGtgctaataaaaaacaaatgaataaatgtatgaaaacaaataaatacatgtggcataaaagacaaaaaaattgcagagtaTATAACAATGCCttgataaaaaatgaataatacagaaaaagaaCATGGAATGAGAGTCAGTTTAAGCTTAAACATCTGCGGActtatttaaatacaatttttttaaacacaaaaaagtttctgttttgcagaacctttttttgtttaaaaaaattgtatttaaatattgattGCAATTTTAAATTGCAATCAATATTTACCTCACAATTAGTAATTGCTGAAACTGTGGACAGATTTATGACATAGAACCTCTTCCTGCTCTTCTGTGGCCAAGTATTAACTTCTGGAGTGGGGTAACCAGATTTTGGGTTAAAATAACCTGGTAACCATAATGATGCCTCAGAGCTGCAAAATGATCCACCAACACATAATGATCTAAACTAAGGGtgaaatttgtgtttaaatgaaaaatctgaatttgaatgttatcatttatattttgtatctTATTGTATCAAATTGAATTTCATGGAATGCAAGAAAGTAATCTTAGGCTCTGAAAATGAATTTCATGCTTAAGGGTGTGTAATTAAACATTTGAAATTCAACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61459 lncRNA upstream 13175 24402708 ~ 24403344 (+) True G51980
TU61444 lncRNA upstream 44047 24350803 ~ 24372472 (+) False b3galnt2
XR_004577836.1 lncRNA downstream 214445 24654900 ~ 24659092 (+) True LOC117596845
TU61661 lncRNA downstream 221006 24661461 ~ 24662405 (+) True G52161
TU61663 lncRNA downstream 248783 24689238 ~ 24696897 (+) True G52163
TU61677 lncRNA downstream 296142 24736597 ~ 24737982 (+) True G52175
TU61681 lncRNA downstream 312711 24753166 ~ 24753398 (+) True G52179
XM_026939157.2 mRNA upstream 14065 24351342 ~ 24402454 (+) False b3galnt2
XM_026939276.2 mRNA downstream 742698 25183153 ~ 25191848 (+) True gpatch11
XM_026939267.2 mRNA downstream 764684 25205139 ~ 25239169 (+) True tsnax
XM_026939268.2 mRNA downstream 764684 25205139 ~ 25239169 (+) False tsnax
XM_026939266.2 mRNA downstream 764684 25205139 ~ 25239169 (+) False tsnax
XM_034301836.1 mRNA downstream 916934 25357389 ~ 25364017 (+) True LOC113541878
TU61306 other upstream 358632 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 611024 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 719225 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 960970 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 1301480 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 2545523 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 2757454 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 2757454 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 2757454 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 4006922 28447377 ~ 28448311 (+) True G53692

Expression Profile