RNA id: XM_026939340.2


Basic Information

Item Value
RNA id XM_026939340.2
length 3861
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC113542066
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29163415 ~ 29361109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttccctctcgAGCGCGTGCCTAGGAGAGGCTTCACATTAACGCGCGCTGGAGACCGCACGAGCCCGGAGATCTGAGTTCCTCTTCACTGCTTGCTGTGGTGTGGAAAGTGGatttatttctgttcttttctcgaGTCGTCTCGTTTAAACCGAGTTGCACGCTGACTAACCTGGAGGCGTCGCGCGGAGCTCCCACACCGGAAAAGGTGATGAGGCATCGCAGCTGATCATGGAGCTTTTCTGGATTTTATTCTTCTCCGTCCTGCAGCGCTTCACACGAGGACAGGGGGTTTACGctcctgCGAACGCACAGATTGTTCACTCTGGCCAGGCGTGTGTGGTGAAGGAGGATAACATCAGTGAGAGGATCTACACCATCCGTGAAGGTGACACGCTTGTGCTACAGTGCCTGGTTAAGGGACATCCACGGCCACagGTACGGTGGACCAAGACAGCAGGCAGCGCTTCAGACAAATTCCAAGACACACCGATCTTCAATGAAACTCTACGTATCGACAACATCCAGAGGGTGCAGGGAGGCCGCTACTACTGCAAGGCCGAGAACGGGGTTGGGGTGGCTGCCATCAAGTCCATCCGGGTAGATGTGCAATACTTGGATAAGCCAGTGCTCACGGTACACCAGACTATCAGTGATGTGAGAGGCAACTACTACCAGGAGAAGACGGTGTTTCTGCGCTGCACTGTCAACTCCAACCCTCCGGCTCGCTTCATCTGGAAACGAGGCAACGTTCCCATCGAACAGAGCAAAGACAACGGTGTGGACATCTACGAACCTTtatacacacagGGTGAGACCAAGGTGCTAAAGCTGAAGAACCTTAGGCCTCAGGACTTTGCGAACTACACATGTCAGGTGTCCGTCCGCAACGTCTGTGACATACCGGATACGTCAGTCACCTTCCGATTGACCAATGCCACCACTCCACCAGCCTTGAAGCTCTCGGTCAATGAGACGTATGTGGTGGACCCAGGCCAGGATGTCACCATGTCGTGTGAGGTTACAGCTGGTTTCCCCACGCCCACTGTGACATGGGCACGATACCCCAGCCCCCTGCCACGCCGCGCCATCATTCGTGGTGGTTCTCTAACGCTGCGCTCCGTCACTCCAGCTGATTCGGGGTTCTACAACTGCACCGCTGTCAACAACGTGGGAAACCCAGCCAGGAGAAACGTCAACCTTATTGTTAGAACAATGAAGAACTTGACATTCCAGATCACACCTGATTCGAACAAGGACAGCGAGAGCATCCAGATGGGTCGTGACCTCAAGCTGTCATGCCACGTGGATGCTCAGCCCCAGGATAAGGTCAACTACACCTGGTACAAGAATGCTGTCCCTGTGTACCCATCAGACAGCCTCATTGTGCTGCGCAGTGACCCGGACATGCCGCCTGGCACCAGCAGCCTGGAGATTGTGGACATGAAGTTCCGAGATCAAGCCACCTACAGCTGCGTGGCCAACTTCCCCGGCAGTAATGTTCCCGAACTCCGAGTGGACGTTAATATCACACAAAGCAGTGTAATTCCTCCAGTCCTGACCGTACCTGTGGGTGGAAGTGTGGTCAATGTGAGCGAAGGTGGGAATGCAGAGCTGGTGTGCCTGGTTGAGGGTAAGCCTCGCCCCCCAGTTCTCTGGTCCCGGGCCAACAAAGACATGCCCATGCCTTCGGGTGACTGGATGATGGAAACACGTGATGGACGCCTGCGTCTCACCAATGTCACGCGAGATATGGCAGGGGCTTACCGATGCCAAACGGCACCGTACAACGGCCTCAACATCAAACGCAGGCTGGGACAAGTGCAGCTCAATGTGGAGTACCCTGCTGTGGTGGACCCGGTCTTCCAGAATGTCCGCTCTCCAAACTACAAGTCTGTCATCTTGCGCTGCATAGTTCTCAAGTCCAATCCGAACCGTATAGCCAGCGCACGCTGGTATCGGAACACGATACCAATCCGCACTCCTCCCGTGGACCCTCAAGACGTCCCACAGCTCCGCTTCATACTCGATCCCACCAACAATGGCACGTATGAGTGTAAAGTCAGCAATGGGGTCGGCACCTCTACTTGCACCTTCCTCGTCTCAGCTCGACCATACACTGCCGAATTTTACTTTGACACGCCAAACCCCATCCGCATCCTGAAGGGCAGCAACTACTCCTATAACTTGCAGTGGACGCAGAAAGAACCAAACACTACGGACAAAGTCATCGGCTATTGGATCAGCGTGCACCAGatgGGTCAAAAGGTGATGTCCAAGCAGATCAACACCAGAGAGCCCGTGAAAGGTGTGCTGATGTCACACACCATAACGGACTTGCGCATCCCTCTGTCCTACGAGGTTGGCCTCACTCCCATCACCGCCTTTGGTACTGGAGACACCGTCACCCGGACCATCCAGTACTCTGAGCCCTACACTTATCCAAGACCTTCAGATCATGTGTGTGGTTTCGAGGATGTGCGGATCTGCGGGTTCTCCCAGGATCGCAGTGATGTGTTTGACTGGACCAGACAAAATCATTTGAGTCAAAACCCTAAGCGCTCGGTAAACACGGGTCCCGACACTGACAGGAGTGGGACCAAAGAAGGTTATTATATGTACATCGAGACATCACGGCCACGTCAGAAAGGGGATAAAGCTCGTCTCCTGTCCCCGCTTTACAACGTCACAGCAGCGCGAGGTCCCTCGGGCTCCGGCAGAGTTCCGTACTGCATCTCTTTCTTTTACCATATGAATGGAAAACACATCGGAACTCTGAATGTCCTCCTGCGAGTGAAGGGCATCGCCACAGTGGATTCTTTAGCATGGACACTCTCAGGCCACCAAGGCCCCAACTGGAGAAAGGCTAACGTTGTGGTGTATCCCAGTGGGCCATTCCAGGTGGTGTTTGAGGGCATCCGTGGTGATGGGTTTGAGGGTGACATTGCTATTGATGATGTCTCCGTCACCAAAGGGAAGTGCAAGCAGGAGAAGCTCCCCGAAACAGACGTGCTTCCAGGAACAGCCCGAAGCCTTCAGCCTGTTACACTGACCGAGCTGCTTGTTAGCTCCATGTGCCTCTACGTCCTGCTATTCTCCAGATGATGGACGATACACCTGTTCATACCCTCGCACCCGCCGCCCCCCTGTGGCATCAACCAACACTGCCCAGATatgttccttcccttctccctcctctcctgtctcttttttttttttcctcattcataCTTTCCTTGCTTTTCCTGGTCATGTTTCTCCATTCTTAGCTTGACCACCCTTCATTTGCACTTGCCATTGTCTCCCTAGACTAgctctttgtttctgtctctgagtTTAACTCTGTATTATCAATGGCTTGCCATCATACCTCAAACCTTTTTGCTATGACTAGTTGAATCCACATTCATAATATTCTTAATATTTGTATCACATCAgtatgtatgtttattatttctcCCCCACTACCCTACCTCTGCACCCTCTCTGTGTTGCTGACACACCAAAGTGTCAATTATGCTACCAAAGATGATGGCGGTTCTTCAGATGAAACGAAGGTTGGGGCAAACACGCCCTTTCAAGCGACGTATCTCTCACCCTTTTGACTGTCCTGCACGGAAATACGAATTCTTGTGACGGATTAGCAGATGGTAGGGTGGAGAGTGTGAAAATGAGGATGGCCAAATGAAATGAGACTAAATCTCATGCTGTCTATTTGGATGAGCTGAATAGAAGAGAACCTGTACAGTTACATGTATATGATATATTACCTAAGTATCAACACATGGACAATGACTACAACTTCTGAGACTAATCGTGACTCAGACTAAGTTAAACTAAAGAAGCACAAatttatatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64516 lncRNA upstream 26904 29118066 ~ 29143380 (+) True G54724
TU63419 lncRNA upstream 673678 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 686386 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 702301 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 721420 28448331 ~ 28448864 (+) True G53693
XR_003404270.2 lncRNA downstream 90787 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 319417 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 322900 29684009 ~ 29684999 (+) False G54958
TU64777 lncRNA downstream 384054 29745163 ~ 29748504 (+) False ablim1a
XR_003404265.2 lncRNA downstream 504647 29865756 ~ 29870830 (+) True LOC113542139
XM_034302925.1 mRNA upstream 34919 29109442 ~ 29135365 (+) False zfand3
XM_034302926.1 mRNA upstream 34919 29115567 ~ 29135365 (+) True zfand3
XM_034302957.1 mRNA upstream 63737 29094691 ~ 29106547 (+) True btbd9
XM_026939049.2 mRNA upstream 63737 29097607 ~ 29106547 (+) False btbd9
XM_026939047.2 mRNA upstream 64465 29094690 ~ 29105819 (+) False btbd9
XM_026939187.2 mRNA downstream 335168 29696277 ~ 29707979 (+) True fam160b1
XM_034303133.1 mRNA downstream 351228 29712337 ~ 29747481 (+) False ablim1a
XM_026939431.2 mRNA downstream 351229 29712338 ~ 29747481 (+) False ablim1a
XM_026939428.2 mRNA downstream 351229 29712338 ~ 29747481 (+) False ablim1a
XM_026939426.2 mRNA downstream 351230 29712339 ~ 29748505 (+) True ablim1a
trnav-aac other upstream 62370 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 64768 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 721973 28447377 ~ 28448311 (+) True G53692
XR_004577886.1 other upstream 1963889 27197909 ~ 27206395 (+) False znf451
XR_004577899.1 other downstream 351149 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 576439 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 993213 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 1118823 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 2424676 31785785 ~ 31796326 (+) True G56222

Expression Profile