RNA id: XM_034302687.1


Basic Information

Item Value
RNA id XM_034302687.1
length 2719
RNA type mRNA
GC content 0.43
exon number 9
gene id zgc:154058
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18983106 ~ 19010647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAACTGTGCTACAGCTCAGTGaagctcactcactcactcaagcACTGTAAAGTTAGAGGTGTGCAAGCGGGAAAACGGTGTACAACGGCACAGAATTCCTGAGTGTTTGACTATAACTCACTGGTCCTGTGTGCTCCTTAAGATTTAGGAGTGGAAAGGTGGAAGAGAAAACGGTTACCCGAGTGGGACGAGGTCGCGGTGTCGGTGATGAGCACAGCCATGAAGTGAAACGTGAATGTTGATGAGGCGGAGGCGCGAGGCTGGAGACTCAGCCAGAGGACATGATGGTAATGTCGGGGTGGATGATCCTGCCCATCAGCCTGCCCGTCCTCACCATCACCGGCATCTGGGTTGTAGGGTCATTATGACTCTGGACTGGACATTCTGTGACCTTGCTGCATCAGCacaagagaagatttaaatattGACACAGTGCTGGTGAAAGGTATGCCATGGCCCTGTATAACCAGCATGTTTGTCCTGTGGATAACTGGTTATATAATCAGTCATGTGAGGAAGATTTGTCCATGCAGAGCGGACCAACACTATGCTGTACTCTGGACCATGTGCCACTCATCAGTAAGTGTGGCACACTACCTCCAGAGAGCTGCTTCTTCAGCCTTATCTGCAGCACAGGATCCTTCATGGTTATGGTGATAGTTTTGCTGCATTATGCTCATGTGATTGAAAGGCGCCAGAACTGCGTGTTAAACACAGCAAGCCTCTCCACTGGCTGGATCTGCTCTGCAGGACTCATCATGGTGGGCAACTTCCAGGTAGATAACGCAAAGGTGTTGCACTATGTTGGGGCCGGTGTGGCTTTTCCCACCAGCGTGCTGTTTGTAAGTGTGCAGTCTGCTCTCACTTACAAACTGGCCAAGACTCAGGGTGAGTACAATATGGGCCATCTCCGTCTCATCATGACCCTGCTGGCCTTCGTAGCCCTGGTACTCAGTGGAGTTTTTTTCGTCCAGGAGAGTTTTGTCCTGCAGCACGCCTCAGCCATCTTCGAGTGGGTCTTCTGTGTAATCATCATGCTGTTTTACGGCACGTTTGCCTTTGAGTTTGCCAGTATCTCCAGCAACACCATGATGGTCCTGGCCAGAGGAGGAGATTTAGGTAGCAACAGCCAAGATCACAAAATGGAGTCCCTCACTGGAACTAGTCAGCACCAGCCTGAGAACATGTCCATGCTTTAACCTCATGGAGGGAGAGGTGGCACAGGCCTGCCCATgctactctctctctttccctgtttcttatatacatgtatgtacaGTAGGGTGCAGAGGAAAACACTAGTTCAGCAGAGGACATCTGGCCTACTTCTGTTCTTAATCTGAGCTAACTTTTGCCAAAGGACTTTGCACACAATTTTGCACATTCTTGAGACCAAATAATTGTCCATCTTCAGTGTCACTCTCTTTGTAGCCCATACACAGAGTGGCTGTAATGCTTAAAGAAGCAGTGTTATATGGACTATATGAGCTGATATGGTATGTGTTGTCGGTTTTGTGAATGTTCATGGCATTGGAATTGTGAAGCTGCCTGTTATAATGTAACAGAGATAGCAATTAATAACACATTCCTGCAAGCTCGGGTGGGCACTGAGACAATTCTGTGCCAATTCTAGTtgattcttaaaaaaaacagaaatgtttaacAAACTATGGAGtttatttttgccttttatATTCAGCCACATTGCCTATACCTATGCCATTTAGTGCGTTTGATATTCTCAAACAGAGgtgctttttgctttttgctcATTGCATATTCTGTTCAGGGCGACTATCATTACCATTGTGCCTTATGAAATGGGGCTAAGCAAAGCTGTCTAATGGACACCATAAATAATCTGTAATTCTGTGATGTTTATCATACTGTCAGGGACAGAGTCCAAGGTTTCAAAAGTGTACTTTGTTTTGTATTATAAATGTTGTCAAAGGAATGCCAATAAGGCCAGCAAGAGTTAACTTTACACTAATGCAGAGCATTCCCATATTTGCTGTATATTTGACTTGTTGGTTTGTAAATGTGATTATATTCTTGCTCATCTCTGCCTGAGGCCAGTATATTGAGAGGTGTGGACTGGGATATTCGAATtgtatttgatttgattgaaGGTCTGTTTACATTTTCCTGCCAGTCTGGTTCTGAACCAATTCTAGTTTAAGAAGAACAGTACAGATTCCACTTACCAGATTTAACAGATCCTGTTTTATATACACAACTCTAATTGTTAAAGATTTGTGCTTCATCAATCGGCCATACTTTTCTTTGATTTCCTCACCTTGTATTTGGTTAATTGTGGTTTTAGTTATCAGCTTAATCTGACTTAATCTTGTGACTATGATCATAAATGCATACAGGTGTcacaaaaatatgatattttgatGTATGAGTTGCAGCAGGACTGCAAGTCCGTTACacaaaaaagccattttttcCGATGGATATACtctattacacactgttactttTTATGTTGGATGCTGATTTAAGTGCCCTTAAACAGAAATCCTGTTACCCATTCTCTAGTGACATTCATAGAATATATACAATTTGCTCCATGTCTTTATCAACCAAAGGCAAGtctaaattttaaattgttgttTCCTGTTGTGCTTGTTTTAGTTTGTAGTCGAATCCTCAGGAAAATCTGTTACACCAGCTTGGAGTCTGTGGTTTTAATAAAACTCAACTGATTAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57836 lncRNA upstream 8396 18970798 ~ 18974710 (+) True G48911
TU57833 lncRNA upstream 15329 18967406 ~ 18967777 (+) True G48908
TU57821 lncRNA upstream 70929 18911486 ~ 18912177 (+) False zgc:110319
TU57584 lncRNA upstream 271811 18708032 ~ 18711295 (+) False G48690
XR_004577820.1 lncRNA downstream 3544 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 16360 19027007 ~ 19036636 (+) False selenou1a
TU57791 lncRNA downstream 16360 19027007 ~ 19036636 (+) False selenou1a
TU58057 lncRNA downstream 191583 19202230 ~ 19203687 (+) True G49104
TU58081 lncRNA downstream 204145 19214792 ~ 19216880 (+) False grxcr1b
XM_026942747.2 mRNA upstream 1790 18977234 ~ 18981316 (+) True ftr14l
XM_034301731.1 mRNA upstream 6505 18973637 ~ 18976601 (+) True LOC117596455
XM_026932800.2 mRNA upstream 9900 18968494 ~ 18973206 (+) True LOC113538004
XM_034302736.1 mRNA upstream 19231 18958385 ~ 18963875 (+) False si:ch211-198a12.6
XM_026934538.2 mRNA downstream 16321 19026968 ~ 19036644 (+) False selenou1a
XM_026934529.2 mRNA downstream 16339 19026986 ~ 19036644 (+) True selenou1a
XM_026934545.2 mRNA downstream 16347 19026994 ~ 19036644 (+) False selenou1a
XM_034303010.1 mRNA downstream 17203 19027850 ~ 19036644 (+) False selenou1a
XM_026944280.2 mRNA downstream 35369 19046016 ~ 19065023 (+) True pdzd7a
TU55884 other upstream 2746458 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2910039 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2911186 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3185902 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4615660 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 330703 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 330703 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 330703 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 330703 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 330703 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile